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Report for CCDS25910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25910.1 Public Mus musculus 12 Eapp 23 108 98 CCDS HistoryNCBI Gene:66266Re-query CCDS DB by CCDS ID:25910.1Re-query CCDS DB by GeneID:66266See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25910.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161592.7 ENSMUSP00000123698.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161592.7Link to Ensembl Protein Viewer:ENSMUSP00000123698.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161592Re-query CCDS DB by Protein ID:ENSMUSP00000123698
Original member Current member EBI ENSMUST00000163433.7 ENSMUSP00000130251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163433.7Link to Ensembl Protein Viewer:ENSMUSP00000130251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163433Re-query CCDS DB by Protein ID:ENSMUSP00000130251
Original member Current member NCBI NM_025456.4 NP_079732.1 Accepted alive Link to Nucleotide Sequence:NM_025456.4Link to Protein Sequence:NP_079732.1Re-query CCDS DB by Nucleotide ID:NM_025456Re-query CCDS DB by Protein ID:NP_079732Link to BLAST:NP_079732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079732.1 281 Q5BU09-1 281 100% 0 0

Chromosomal Locations for CCDS 25910.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54673583 54673850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54678510 54678623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54685860 54685971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54692000 54692095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54692775 54692956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54695711 54695784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGAACCGACTCCAGGATGACTATGACCCGTACGCGGTGGAAGAGCCGAGCGACGAGGAGCCGGCTCTGA
GCAGTTCTGAAGATGAACTGGATGTGCTTTTACATGGAACCCCAGACCAAAAGCGAAAACTCATCCGGGA
ATGTCTTACTGGAGAAAGTGAGTCATCAAGTGAAGATGAATTTGAAAAAGAAATGGAGGCTGAACTAAAC
TCCACCATGAAGACAATGGAGGACCAGTTATCCTCACTGGGAACAGGGTCTTCTTCAGGAGTTGCCAAAG
TGGGAGGAGTCACAGAAAAGTTCTATGATGAGATATATTTTGATTCTGATTCTGAGGATGAGGACAAAAC
AGTGACCAAGAAGAAGAAGAAGAAACAACACAGGATTCCAACAAACGATGAGCTGCTGTATGATCCTGAG
AAAGATAACAGAGACCAGGCCTGGGTTGACGCCAAGAGGAGGGGTTATCATGCTTTTGGATTGCAAAGGC
CACGTCAGAAACAACAGCCTGTTCCAAACAGTGATGCTGTTCTGAATTGCCCAGCCTGTATGACGACATT
GTGCCTTGATTGCCAGAGGCATGAATCCTACAAGACGCAGTACAGGGCAATGTTTGTGATGAATTGTTCT
ATCAACAGAGAAGAGGTTCTGAGATACAAGAATCCAGAAAACAGGAGGAAACGGCGGAGTGCTAAGAAGA
TGAGGTCTAATCCTGAAGATCCCGCAGAGAGAGAAGCGGAGGAAATCTATCACCCTGTCATGTGCACAGA
GTGTTCAACTGAAGTGGCAGTCTATGACAAGGATGAAGTCTTTCACTTTTTCAATGTTTTAGCGAGCCAT
TCTTGA

Translation (281 aa):
MNRLQDDYDPYAVEEPSDEEPALSSSEDELDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELN
STMKTMEDQLSSLGTGSSSGVAKVGGVTEKFYDEIYFDSDSEDEDKTVTKKKKKKQHRIPTNDELLYDPE
KDNRDQAWVDAKRRGYHAFGLQRPRQKQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCS
INREEVLRYKNPENRRKRRSAKKMRSNPEDPAEREAEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASH
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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