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Report for CCDS25961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25961.1 Public Mus musculus 12 Psma3 23 108 98 CCDS HistoryNCBI Gene:19167Re-query CCDS DB by CCDS ID:25961.1Re-query CCDS DB by GeneID:19167See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160027.7 ENSMUSP00000125548.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160027.7Link to Ensembl Protein Viewer:ENSMUSP00000125548.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160027Re-query CCDS DB by Protein ID:ENSMUSP00000125548
Original member Current member NCBI NM_011184.5 NP_035314.3 Accepted alive Link to Nucleotide Sequence:NM_011184.5Link to Protein Sequence:NP_035314.3Re-query CCDS DB by Nucleotide ID:NM_011184Re-query CCDS DB by Protein ID:NP_035314Link to BLAST:NP_035314.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035314.3 255 O70435 255 100% 0 0

Chromosomal Locations for CCDS 25961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 70974747 70974767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70978733 70978815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70983319 70983442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70984493 70984594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70984672 70984745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70986863 70986935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70988424 70988489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70990485 70990531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70993013 70993080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70993506 70993570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70994351 70994395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGAGCTCCATCGGCACTGGGTATGACTTGTCAGCCTCTACGTTCTCTCCTGATGGAAGAGTTTTCCAAG
TTGAATATGCCATGAAGGCTGTGGAAAACAGTAGTACAGCTATTGGGATCAGATGTAAAGATGGTGTTGT
GTTTGGGGTAGAAAAACTAGTCCTTTCTAAACTTTATGAAGAAGGCTCCAATAAACGTCTTTTTAATGTT
GATCGACATGTTGGAATGGCAGTTGCAGGTTTGCTGGCAGATGCTCGTTCATTAGCAGACATAGCGAGAG
AAGAAGCATCCAACTTTAGGTCCAACTTCGGCTATAACATTCCTCTAAAACATCTTGCAGACAGAGTGGC
CATGTATGTACACGCCTATACACTCTACAGCGCTGTTAGACCTTTTGGCTGCAGTTTCATGTTGGGGTCT
TACAGTGCGAATGATGGTGCACAGCTCTATATGATCGACCCATCAGGTGTTTCATATGGTTACTGGGGCT
GTGCGATTGGCAAAGCCAGGCAGGCTGCAAAGACAGAGATAGAAAAGCTTCAGATGAAGGAAATGACTTG
CCGTGATGTAGTTAAAGAAGTTGCAAAAATAATTTACATAGTACACGATGAAGTTAAGGATAAAGCTTTT
GAACTGGAGCTCAGCTGGGTTGGTGAATTAACTAAAGGAAGACATGAAATTGTTCCCAAAGACATAAGAG
AGGAAGCAGAGAAATATGCCAAGGAATCTTTGAAGGAAGAAGATGAATCAGATGATGACAATATGTAA

Translation (255 aa):
MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNV
DRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS
YSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAF
ELELSWVGELTKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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