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Report for CCDS26171.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26171.2 Public Mus musculus 12 Dio3 23 108 98 CCDS HistoryNCBI Gene:107585Re-query CCDS DB by CCDS ID:26171.2Re-query CCDS DB by GeneID:107585See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 26171.1
The coding region has been updated to extend the N-terminus to one that is also supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 26 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 26171.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173014.1 ENSMUSP00000133920.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173014.1Link to Ensembl Protein Viewer:ENSMUSP00000133920.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173014Re-query CCDS DB by Protein ID:ENSMUSP00000133920
Original member Current member NCBI NM_172119.2 NP_742117.2 Accepted alive Link to Nucleotide Sequence:NM_172119.2Link to Protein Sequence:NP_742117.2Re-query CCDS DB by Nucleotide ID:NM_172119Re-query CCDS DB by Protein ID:NP_742117Link to BLAST:NP_742117.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742117.2 304 Q91ZI8 304 100% 0 0

Chromosomal Locations for CCDS 26171.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110279232 110280146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 170

Nucleotide Sequence (915 nt):
ATGCCTCGCCAGGCCGCCTCGAGGTTGGTGGTCGGAGAAGGTGAAGGGCCCCCGGGGGCTTCGGGGCCCG
CGGCCACCATGCTCCGCTCTCTGCTGCTTCACTCGCTGAGGCTCTGCGCCCAGACCGCCTCGTGCCTCGT
GCTGTTCCCGCGCTTCCTAGGCACGGCCTTCATGCTCTGGCTTTTAGATTTCTTGTGCATCCGCAAGCAT
TTCCTGCGCCGTCGCCATCCTGACCACCCTGAGCCCGAAGTAGAGCTCAACAGTGAAGGCGAGGAGATGC
CCCCTGACGACCCGCCCATATGCGTATCAGACGACAACCGTCTGTGCACCCTGGCCTCTCTCAAAGCCGT
GTGGCATGGCCAGAAATTGGATTTCTTCAAGCAAGCCCATGAGGGTGGCCCAGCGCCCAACTCGGAGGTT
GTCCGACCTGATGGCTTCCAGAGCCAGCGCATCCTCGACTACGCACAAGGGACCCGCCCGTTGGTGCTCA
ATTTTGGCAGCTGTACCTGACCACCGTTCATGGCGCGGATGAGCGCCTTCCAGCGCCTGGTCACCAAGTA
CCAGCGCGACGTTGACTTCCTTATCATCTACATCGAGGAAGCCCACCCATCCGACGGCTGGGTCACCACA
GATTCACCCTATGTCATCCCCCAGCACCGCAGCCTGGAGGACCGTGTCAGCGCAGCGAGAGTACTACAAC
AAGGTGCACCTGGCTGTGCTCTGGTCCTGGACACTATGGCCAACTCTAGCAGTTCCGCATATGGTGCCTA
TTTTGAGCGCCTCTACGTCATCCAGAGTGGCACCATCATGTACCAGGGAGGCCGTGGCCCCGACGGTTAC
CAGGTGTCTGAGTTGCGCACTTGGTTGGAGCGCTATGATGAACAGTTGCATGGTACTAGGCCACATCGAT
TCTAA

Translation (304 aa):
MPRQAASRLVVGEGEGPPGASGPAATMLRSLLLHSLRLCAQTASCLVLFPRFLGTAFMLWLLDFLCIRKH
FLRRRHPDHPEPEVELNSEGEEMPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEV
VRPDGFQSQRILDYAQGTRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTT
DSPYVIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGY
QVSELRTWLERYDEQLHGTRPHRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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