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Report for CCDS26186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26186.1 Public Mus musculus 12 Coa8 23 108 98 CCDS HistoryNCBI Gene:68020Re-query CCDS DB by CCDS ID:26186.1Re-query CCDS DB by GeneID:68020See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040519.11 ENSMUSP00000038865.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040519.11Link to Ensembl Protein Viewer:ENSMUSP00000038865.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040519Re-query CCDS DB by Protein ID:ENSMUSP00000038865
Original member Current member NCBI NM_026511.2 NP_080787.1 Accepted alive Link to Nucleotide Sequence:NM_026511.2Link to Protein Sequence:NP_080787.1Re-query CCDS DB by Nucleotide ID:NM_026511Re-query CCDS DB by Protein ID:NP_080787Link to BLAST:NP_080787.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080787.1 192 Q9CQW7-1 192 100% 0 0

Chromosomal Locations for CCDS 26186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111713293 111713418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111722612 111722809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111724340 111724403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111730022 111730112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111733667 111733766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGCGGCTTTGCGGCCCGGAAGCAGAGCGCTTCGCCGGCTTCTCTGCCGGTCCTTCTCCGGCGGCGGCG
GCGTTAGGTTGGCCCGTGAGCGCCCTACGGATCACAGGGATGCGGCGTCCAGCCGGGTCTCAAGATTCTG
CCCTCCAAGACAGTCTTGCCATGATTGGATAGGCCCCCCAGACAAATGCTCAAACCTTCGTCCCGTTCAT
TTTCACATCCCTGAAAACGAGTCTCCCTTGGAGCAAAGACTTAGAGAATTGAGACAAGAAACGCAAGAAT
GGAATCAACAGTTCTGGGCCAAGCAGAACTTGTCCTTCAATAAGGAAAAAGAAGAATTCATTTACTCAAG
ACTACAAGCTAAGGGCGCAGGCTTGCGGACTGAGTCAGGCCAAAGAGCAACGCTGGATGCAGAGGAGATG
GCCGACTTCTATAAGGACTTTCTGAGTAAGAATTTCCAGAAGCACATGCGCTATAACCGAGACTGGTACA
AGCGTAATTTTGCCATCACTTTCTTCATGGGGAAGGTGGTCCTGGAGAGGATGTGGAGCAAGCTAAGGCA
AAAGAAGACAAGCAGTTAG

Translation (192 aa):
MAALRPGSRALRRLLCRSFSGGGGVRLARERPTDHRDAASSRVSRFCPPRQSCHDWIGPPDKCSNLRPVH
FHIPENESPLEQRLRELRQETQEWNQQFWAKQNLSFNKEKEEFIYSRLQAKGAGLRTESGQRATLDAEEM
ADFYKDFLSKNFQKHMRYNRDWYKRNFAITFFMGKVVLERMWSKLRQKKTSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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