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Report for CCDS2627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2627.1 Public Homo sapiens 3 HACL1 24 110 108 CCDS HistoryNCBI Gene:26061Re-query CCDS DB by CCDS ID:2627.1Re-query CCDS DB by GeneID:26061See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2627.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321169.10 ENSP00000323811.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321169.10Link to Ensembl Protein Viewer:ENSP00000323811.5Re-query CCDS DB by Nucleotide ID:ENST00000321169Re-query CCDS DB by Protein ID:ENSP00000323811
Original member Current member NCBI NM_012260.4 NP_036392.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012260.4Link to Protein Sequence:NP_036392.2Re-query CCDS DB by Nucleotide ID:NM_012260Re-query CCDS DB by Protein ID:NP_036392Link to BLAST:NP_036392.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036392.2 578 Q9UJ83-1 578 100% 0 0

Chromosomal Locations for CCDS 2627.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 15560865 15560897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15563358 15563544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15564551 15564658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15567844 15568002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15568432 15568586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15571668 15571769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15573159 15573242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15574977 15575082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15579910 15580045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15582877 15582989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15585248 15585342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15586525 15586602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15589540 15589612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15591600 15591680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15596384 15596424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15601090 15601194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15601383 15601463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGCCGGACAGTAACTTCGCAGAGCGCAGCGAGGAGCAGGTGTCTGGTGCTAAAGTCATCGCTCAGGCCC
TGAAAACGCAAGATGTGGAGTACATATTTGGCATCGTAGGCATCCCAGTGACCGAAATCGCCATTGCTGC
CCAGCAGCTAGGCATCAAGTACATCGGGATGAGGAATGAGCAAGCGGCTTGTTATGCTGCCTCCGCGATT
GGATATCTGACAAGCAGGCCAGGAGTCTGCCTTGTTGTTTCTGGCCCAGGTCTCATCCATGCCTTGGGCG
GTATGGCAAATGCAAACATGAACTGCTGGCCCTTGCTTGTGATTGGTGGTTCCTCTGAAAGAAACCAAGA
AACAATGGGAGCTTTCCAGGAGTTTCCTCAGGTTGAAGCTTGTAGATTATATACCAAGTTCTCTGCCCGC
CCAAGCAGCATAGAAGCTATTCCTTTTGTTATTGAAAAGGCAGTGAGAAGCAGTATCTATGGTCGTCCAG
GTGCTTGCTATGTTGACATACCAGCAGATTTTGTGAACCTTCAGGTGAATGTGAATTCTATAAAGTACAT
GGAACGCTGCATGTCACCTCCTATTAGCATGGCAGAAACCTCTGCTGTGTGCACGGCGGCTTCTGTTATT
AGGAATGCCAAACAACCCCTTCTTATCATCGGGAAAGGTGCTGCTTACGCTCATGCAGAAGAGAGTATCA
AGAAATTGGTGGAGCAATATAAACTGCCATTTTTGCCCACCCCTATGGGGAAGGGTGTTGTCCCTGACAA
CCATCCATACTGTGTAGGTGCAGCCAGATCCAGGGCTTTGCAATTTGCTGATGTAATTGTGTTATTTGGT
GCCAGACTAAATTGGATTTTACATTTTGGACTGCCTCCAAGATATCAGCCAGATGTGAAGTTTATCCAGG
TTGATATCTGTGCAGAAGAATTGGGGAATAATGTAAAGCCCGCTGTTACTTTGCTAGGAAACATACATGC
TGTCACTAAGCAGCTTTTAGAGGAACTTGATAAAACACCATGGCAGTATCCTCCAGAGAGCAAGTGGTGG
AAAACTCTGAGAGAAAAAATGAAGAGCAATGAAGCTGCATCCAAGGAACTAGCTTCTAAAAAATCCCTGC
CTATGAATTATTACACAGTATTCTACCATGTTCAAGAACAACTACCTAGAGACTGTTTCGTGGTAAGTGA
AGGAGCAAATACTATGGACATTGGACGGACTGTGCTTCAGAACTACCTTCCTCGTCACAGGCTTGATGCT
GGTACTTTCGGAACAATGGGAGTTGGTTTGGGATTTGCTATTGCAGCTGCCGTGGTGGCTAAAGATAGAA
GCCCTGGGCAATGGATCATCTGTGTGGAAGGAGACAGTGCATTTGGGTTTTCTGGCATGGAGGTAGAAAC
CATCTGCAGGTACAACTTGCCAATCATACTGTTGGTAGTGAATAACAATGGAATTTACCAAGGTTTTGAT
ACAGATACTTGGAAAGAAATGTTAAAATTTCAAGATGCTACTGCAGTGGTCCCTCCAATGTGTTTGCTGC
CAAATTCACATTATGAGCAAGTCATGACTGCATTTGGAGGCAAAGGGTATTTTGTACAAACACCAGAAGA
ACTCCAAAAATCCCTGAGGCAGAGCCTAGCAGACACAACTAAACCTTCTCTTATCAACATCATGATTGAG
CCACAAGCCACACGGAAGGCCCAGGATTTTCATTGGCTGACCCGCTCTAATATGTAA

Translation (578 aa):
MPDSNFAERSEEQVSGAKVIAQALKTQDVEYIFGIVGIPVTEIAIAAQQLGIKYIGMRNEQAACYAASAI
GYLTSRPGVCLVVSGPGLIHALGGMANANMNCWPLLVIGGSSERNQETMGAFQEFPQVEACRLYTKFSAR
PSSIEAIPFVIEKAVRSSIYGRPGACYVDIPADFVNLQVNVNSIKYMERCMSPPISMAETSAVCTAASVI
RNAKQPLLIIGKGAAYAHAEESIKKLVEQYKLPFLPTPMGKGVVPDNHPYCVGAARSRALQFADVIVLFG
ARLNWILHFGLPPRYQPDVKFIQVDICAEELGNNVKPAVTLLGNIHAVTKQLLEELDKTPWQYPPESKWW
KTLREKMKSNEAASKELASKKSLPMNYYTVFYHVQEQLPRDCFVVSEGANTMDIGRTVLQNYLPRHRLDA
GTFGTMGVGLGFAIAAAVVAKDRSPGQWIICVEGDSAFGFSGMEVETICRYNLPIILLVVNNNGIYQGFD
TDTWKEMLKFQDATAVVPPMCLLPNSHYEQVMTAFGGKGYFVQTPEELQKSLRQSLADTTKPSLINIMIE
PQATRKAQDFHWLTRSNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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