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Report for CCDS26407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26407.1 Public Mus musculus 13 Prl2a1 23 108 98 CCDS HistoryNCBI Gene:56635Re-query CCDS DB by CCDS ID:26407.1Re-query CCDS DB by GeneID:56635See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26407.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023602.5 ENSMUSP00000023602.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023602.5Link to Ensembl Protein Viewer:ENSMUSP00000023602.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023602Re-query CCDS DB by Protein ID:ENSMUSP00000023602
Original member Current member NCBI NM_019991.1 NP_064375.1 Accepted alive Link to Nucleotide Sequence:NM_019991.1Link to Protein Sequence:NP_064375.1Re-query CCDS DB by Nucleotide ID:NM_019991Re-query CCDS DB by Protein ID:NP_064375Link to BLAST:NP_064375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064375.1 228 Q9JHK0 228 100% 0 0

Chromosomal Locations for CCDS 26407.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27801703 27801733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27804925 27805100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27806277 27806384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27807425 27807604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27808390 27808581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGCAGCTATCTGTAACTCATCCTTGCTGCAGGACCCTGATTCTGCTCCTGGTGTCTAACCTGCTTCTGT
GGGAAAGTGAGGCCGTGCTGCCCATATGCTCAGTAAGGAATGGACGCTGCTTTGGTTCCTTTGAAGAACT
GCTTGAAAGAGCTGTCAGTTTGTCTGAAGAGATAAGTAAAAAAGCCTTTGAACTCTTCACTGCATTTGAT
AGTCAGTATGCCCAGAGCCACCAGCTCATTGTCAAGAGCCTCAAAAAATGTCACACATCTTCTCTCGACC
TTCCAAAACCAGGGAGTCAAGCCATGCAGACACATCCTGTAACCCTACTGAAATTAGCAAGCAAATTATT
GAGAGCCTGGCAAGTCCCTCTGAACCATCTAGTGAACAACCTGCCATCCTTGAAAAACGTCTCTCCTTCT
ATCCTCTCTAAAGCCAAAGAGATTGAGGAAAAGAGCAATGGACTCCTGGAGGGAGTTAAGAGCATTCTCA
TCCAAATGCAAAATGGAGATACAGAAGATGAGAACTACCCTGGCTGGTCTGGACTGGCATCCTTGAAGTC
AGAGACTGAAGATATTCGCCTCTTTGCATATTATAACATGATCCGCTGTGAGGGCAGAGACACTCAGAAG
GTTGAAACTGCTCTCAAGATGGTGAAATGCAAAATTTCAAATGAAAACAACTGCTAA

Translation (228 aa):
MQLSVTHPCCRTLILLLVSNLLLWESEAVLPICSVRNGRCFGSFEELLERAVSLSEEISKKAFELFTAFD
SQYAQSHQLIVKSLKKCHTSSLDLPKPGSQAMQTHPVTLLKLASKLLRAWQVPLNHLVNNLPSLKNVSPS
ILSKAKEIEEKSNGLLEGVKSILIQMQNGDTEDENYPGWSGLASLKSETEDIRLFAYYNMIRCEGRDTQK
VETALKMVKCKISNENNC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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