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Report for CCDS26498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26498.1 Public Mus musculus 13 Susd3 23 108 98 CCDS HistoryNCBI Gene:66329Re-query CCDS DB by CCDS ID:26498.1Re-query CCDS DB by GeneID:66329See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058196.12 ENSMUSP00000061423.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058196.12Link to Ensembl Protein Viewer:ENSMUSP00000061423.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058196Re-query CCDS DB by Protein ID:ENSMUSP00000061423
Original member NCBI NM_025491.4 NP_079767.2 Updated not alive Link to Nucleotide Sequence:NM_025491.4Link to Protein Sequence:NP_079767.2Re-query CCDS DB by Nucleotide ID:NM_025491Re-query CCDS DB by Protein ID:NP_079767
Current member NCBI NM_025491.5 NP_079767.2 Accepted alive Link to Nucleotide Sequence:NM_025491.5Link to Protein Sequence:NP_079767.2Re-query CCDS DB by Nucleotide ID:NM_025491Re-query CCDS DB by Protein ID:NP_079767Link to BLAST:NP_079767.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079767.2 269 Q9D176-1 269 100% 0 0

Chromosomal Locations for CCDS 26498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49231136 49231331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49237424 49237612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49238789 49238936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49240483 49240671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49248045 49248132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGCGCCGAACGTCTGCGACCCTTCGGGGCCGAGCGAGGCCGCGGTGGCGTGCTGGGAACACAACGCCTG
TCCCAGTGAACCAGACAGGCACCTGTGCTCAGCTCCATCCCCCGCCTCAAGGCACCTTGCAAGTCGTCCG
TGGAGATGGCACATCTCTGGGGACTGTGCTCATATTCCACTGCCCCTCTGGCCACCAGATGGTGGGGTCT
GGCCTCCTCACTTGTGCCTGGAATGGGAGCACCGTTGACTGGTCTTCAGGAAGCCCTGTGTGCAAAGCTG
TGCCACCGCATGAGACCTTCGGCTTTAAGGTGGCAGTGATCGCCTCCATTGTGAGCTGTGCCATCATCCT
GCTCATGTCCATGGCCTTCCTCACCTGCTGCCTCCTCAAGTGTGTGCAGAAAAATGAGCGGCGGCGTGCT
GACAGGACGGCACAACTCTGGTACCAGCTGAGAGGCGAGGACCTGGAGACGGTACAAGCTGCCTACTTGG
GCCTCAAGGGACACAACCACAATAACAGCAGCAGCGTCGGTGGTGGCAATGGTGGCCCCAGTGGTGGTGG
CGGCAAGCCAGGAATTCAGCACAGCCAGGCCCATGACAACCACAGCTTCACCACAGACCCTGGTGACATC
AGAGAGCAGGCTGGTGTGACCCACAGTGTGGACAAAGACCCTTGGACTTTCAGGATGGGAACTCCGGGCC
CTGGTGGCTGCTCCAGCTCGCCAGGCACCTACGTGATGGTCCACGCGTTGAACTCTGCAGGGCTGGCCCC
TGGAAATCCTGGGAGGCCCAAAGTGTACCTTCCAGGGTGA

Translation (269 aa):
MRRTSATLRGRARPRWRAGNTTPVPVNQTGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFHCPSGHQMVGS
GLLTCAWNGSTVDWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMSMAFLTCCLLKCVQKNERRRA
DRTAQLWYQLRGEDLETVQAAYLGLKGHNHNNSSSVGGGNGGPSGGGGKPGIQHSQAHDNHSFTTDPGDI
REQAGVTHSVDKDPWTFRMGTPGPGGCSSSPGTYVMVHALNSAGLAPGNPGRPKVYLPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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