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Report for CCDS26529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26529.1 Public Mus musculus 13 4833439L19Rik 23 108 98 CCDS HistoryNCBI Gene:97820Re-query CCDS DB by CCDS ID:26529.1Re-query CCDS DB by GeneID:97820See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026989.14 ENSMUSP00000026989.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026989.14Link to Ensembl Protein Viewer:ENSMUSP00000026989.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026989Re-query CCDS DB by Protein ID:ENSMUSP00000026989
Original member Current member NCBI NM_133797.4 NP_598558.1 Accepted alive Link to Nucleotide Sequence:NM_133797.4Link to Protein Sequence:NP_598558.1Re-query CCDS DB by Nucleotide ID:NM_133797Re-query CCDS DB by Protein ID:NP_598558Link to BLAST:NP_598558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598558.1 303 Q9DBN4-1 303 100% 0 0

Chromosomal Locations for CCDS 26529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54552612 54552817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54552898 54553037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54553198 54553304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54556527 54556651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54559198 54559324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54561693 54561871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54564185 54564212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCTTCAAGACAACCAGAAGTGCCTGCTCTTGCTCCCAGCGGGCCTCTAGGCAAGATGTCCCTGCCCA
TCGGGATGTGCCGTCGGGCATTCAGCTATGATGATGCCCTAGAGGACCCTGCGCCCATGACTCCTCCTCC
ATCGGACATGGGCAGCATCCCCTGGAAGCCAGTGATTCCAGAGCGCAAGTATCAGCATCTTGACAAGACA
GAGGAGGGCGCGGCCAGTGTCTCTTCCCTTGCTGTGACTCCATCACCAGCCACTGACAGTTCAGACAAGG
CCCCTGTGGTGAAGGCTAAAGCTACCCATGTCATCATGAGTTCCCTGATCACAAAGCAGACCCAGGAGAG
CATCCAGCGTTTTGAACAACAGGCAGGACTGAGAGATGCTGGCTACACACCCCATAAGGGCCTTACCACG
GAGGAGACCAAGTACCTTCGAGTGGCAGAAGCACTCCATAAACTAAAGCTGCAGAGTGGAGAGACAGCAA
AAGAAGAGAAGCACCCTGCATCAGCCCAGTCCACCCCGAGCAGCACCCCTCACGCGTCCCCTAAGCAGAA
GTCCAGAGGCTGGTTCCCATCTGGCTCCTCCACAGCCTTACCTGCTCCGAATCCTCACACCATGGATCCT
GGGAGTGGAAATGATAGGAACTCAGCAGACAAATGGAGCCTCTTTGGACCACGACCCCTGCAGAAATCTG
ATTCTGGTTTTGCTATTCAGGCTTACAAAGGTGCCCCAAGACCCTCTCCTATGGAGGTGATGCGTGCCCA
GGCCACACGAGTAGGTGAAGATCCAGCAACTTTCAAACCACCAAAGATGGATGTCCCAATGGTAGAAGGA
AAGAAGCAACCACTTCGAACCCATAATCTCAAACCCCGTGACCTGAATGTGCTCACACCCACTGGCTTCT
AG

Translation (303 aa):
MASRQPEVPALAPSGPLGKMSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKYQHLDKT
EEGAASVSSLAVTPSPATDSSDKAPVVKAKATHVIMSSLITKQTQESIQRFEQQAGLRDAGYTPHKGLTT
EETKYLRVAEALHKLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGWFPSGSSTALPAPNPHTMDP
GSGNDRNSADKWSLFGPRPLQKSDSGFAIQAYKGAPRPSPMEVMRAQATRVGEDPATFKPPKMDVPMVEG
KKQPLRTHNLKPRDLNVLTPTGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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