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Report for CCDS26571.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
26571.1 |
Public |
Mus musculus |
13 |
Rmi1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:74386](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:26571.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:74386](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 26571.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000042450.9 |
ENSMUSP00000041035.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000042450.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000041035.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000042450](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000041035](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000224479.1 |
ENSMUSP00000153050.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000224479.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000153050.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000224479](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000153050](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000225815.1 |
ENSMUSP00000153621.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000225815.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000153621.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000225815](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000153621](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000225828.1 |
ENSMUSP00000153675.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000225828.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000153675.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000225828](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000153675](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001168248.1 |
NP_001161720.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001168248.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001161720.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001168248](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001161720](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001168248.2 |
NP_001161720.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001168248.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001161720.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001168248](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001161720](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001161720.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_028904.3 |
NP_083180.3 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_028904.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_083180.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_028904](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_083180](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_028904.4 |
NP_083180.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_028904.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_083180.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_028904](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_083180](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_083180.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 26571.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1851 nt): ATGAGTGTAGCTAGTGCTGTATTAAGAGTTGAAACCTGGCTTTTGGCAACATGGCATGTTAAGGTACCTC CAATGTGGCTGGAAGCTTGTGTTAACTGGATCCAAGAAGAAAATAATAATGCTACTTTGAGTCAGGCACA AATAAATAAACAAGTGTTGGAGCAATGGCTTCTTACTGACCTGAGAGACTTGGAACATCCTCTCTTACCT GATGACATTTTAGAACTGCCAAAGGGAGAACTGAATGGGTTTTATGCTCTACAGATCAATTCTTTGGTTG ATGTGAGTCAGCCTGCTTATTCACAGATACAGAAGCTGAGAGGAAAGAATACAACCAATGATCTCGTCTC AGCTGAAACGCAGAGTACTCCAAAACCATGGGAAGTGAGGCCTTCTCGGATGCTGATGCTACAGCTCACT GATGGTGTCACACACATTCAGGGAATGGAGTATCAGTCTATCCCAGCTCTCCATAGTGGTCTTCCTCCAG GTACAAAAATTTTAGTTCGTGGATGCATTTTGTTCCGTCTTGGTGTTCTCTTACTGAAACCAGAAAATGT GAAGGTGCTAGGGGGTGAGGTAGATGGTCTTTCAGAAGAAAATGCCCAAGAAAAAGTACTTGCAAGATTA ATTGGGGAACTTGATCCTACAGTTCCAGTCATTCCAAATAATTCCATTCACAACGTGCCCAAAGTTTCAG GGGGCTTAGATGCTGTTTTGGGGCCCTCGGATGAAGAACTCTTGGCAAGTCTTGATGAAAGTGAAGAGTC TGCAGCAAATAATGACGTGGCTATGGAAAGAAGCTGTTTCAGCACAGGCACTTCCTCAAATACTACTCCG ACAAATCCGTCTGGTTTTGAGCCAGGATGTAACATTTCTTCAAGGCCAAAGGAGAAACCACCAAACCAGC CCACGCATTTCACTGATGGAGAATTTGATGACTTTTCACTGGAAGAGGCCTTGCTTTTGGAAGAGACTGT CCAGAAAGAACAGATGGAAACAAAAGCATCGCAGCCACTAACTTTGAAGGAAAACACTGGTAAATGTATG GAGATTTTTTCACATAAACCTAGTAGTCTGAACCACACAGCTTTGATTCATAAACAAGGAAACAGCAATT TTGATGAAAAAACATCTGAACAAATGATTCATGAAGACAAATTTTTTGATTGTGCATCTACTAGAAACCA TCATAAGAGATTCTCAGCTCATGATTTTACAAATGACAGTAAGATTTCAGAAGTAGATGATGCAGCACAA CAGACCCTCAGCAGTTCAAATGTACATTGCTTACGTAATAAAATATTAAACAGAAAGCTGGACCTATCAG AAAAGAGTTCACAAATTTCTAAAGAAAATGGCCACCCTTTCCAGGCTTGTTCTTCAAGATCATTTGAGAA TAATACTTATCTATCTATTGGCATGGACTTACATTCTCCACCCTTTATCTATTTGTCTGTTCTAATGGCC AGAAAGCCAAAGGAAGTTACTACTGTGACAGTCAAAGCGTTTATTGTCACTTTAACTGGAAATCTCTCAA GTTCTGGTGGCTTTTGGGGTGTAACTGCAAAAGTTTCTGATGGTACTGCATATCTAGATGTAGATTTTAT AGACGAAATACTTACCAGTATGATAGGGTATTCAGTACCAGAAATGAAACAATTAAGAAAGGACCCTCTT AAATATAAAACATTCCTAGAAGGGTTACAGAAATGTCAGCGAGATCTGATCGATTTGTGTTGCCTGATGA CTATTTCATACGATCCTTCTTCATGTAAAGGGGTGGTGCTGGAATTGCAAGATGTTGGTATGGAACACGT GGAGAACCTAAAGAAACGGTTGAATAAATAA
Translation (616 aa): MSVASAVLRVETWLLATWHVKVPPMWLEACVNWIQEENNNATLSQAQINKQVLEQWLLTDLRDLEHPLLP DDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVSAETQSTPKPWEVRPSRMLMLQLT DGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLGGEVDGLSEENAQEKVLARL IGELDPTVPVIPNNSIHNVPKVSGGLDAVLGPSDEELLASLDESEESAANNDVAMERSCFSTGTSSNTTP TNPSGFEPGCNISSRPKEKPPNQPTHFTDGEFDDFSLEEALLLEETVQKEQMETKASQPLTLKENTGKCM EIFSHKPSSLNHTALIHKQGNSNFDEKTSEQMIHEDKFFDCASTRNHHKRFSAHDFTNDSKISEVDDAAQ QTLSSSNVHCLRNKILNRKLDLSEKSSQISKENGHPFQACSSRSFENNTYLSIGMDLHSPPFIYLSVLMA RKPKEVTTVTVKAFIVTLTGNLSSSGGFWGVTAKVSDGTAYLDVDFIDEILTSMIGYSVPEMKQLRKDPL KYKTFLEGLQKCQRDLIDLCCLMTISYDPSSCKGVVLELQDVGMEHVENLKKRLNK
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