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Report for CCDS26770.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26770.2 Public Mus musculus 13 Mier3 23 108 98 CCDS HistoryNCBI Gene:218613Re-query CCDS DB by CCDS ID:26770.2Re-query CCDS DB by GeneID:218613See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26770.1
The coding region has been updated to represent an alternative splice site in an internal exon, and to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26770.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109272.8 ENSMUSP00000104895.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109272.8Link to Ensembl Protein Viewer:ENSMUSP00000104895.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109272Re-query CCDS DB by Protein ID:ENSMUSP00000104895
Original member Current member NCBI NM_172593.3 NP_766181.2 Accepted alive Link to Nucleotide Sequence:NM_172593.3Link to Protein Sequence:NP_766181.2Re-query CCDS DB by Nucleotide ID:NM_172593Re-query CCDS DB by Protein ID:NP_766181Link to BLAST:NP_766181.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766181.2 551 Q3UHF3-1 551 100% 0 0

Chromosomal Locations for CCDS 26770.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 111686346 111686354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111687828 111687852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111691236 111691381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111703629 111703763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111705222 111705342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111706002 111706087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111706638 111706713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111708214 111708365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111709726 111709807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111711686 111711780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111714241 111714368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111714445 111714587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111714684 111715141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGCGGAGGCTTCCTTTGGAAGTTCGAGCCCAGTTGGGTCTTTGTCTTCTGAGGACCATGACTTTGACC
CCACTGCTGAGATGCTAGTTCATGACTATGATGATGAAAGAACTCTAGAGGAAGAAGAGTTGATGGACGA
CGGGAAGAACTTCAGCTCTGAAATTGAAGACTTAGAGAAGGAAGGGAACATGCCGCTAGAAGACCTGTTG
GCGTTCTACGGCTATGAATCTACAATTCCAGCGGTTGCGAATTCCAGTGCAAACAGCTCCCCAAGTGAAC
TTGCAGACGAACTACCAGACATGACTCTAGACAAAGAAGAGATCGCGAAAGACCTGCTGTCCGGCGATGA
CGAGGAAACTCAGTCTTCCGCTGATGATCTGACACCGTCCGTGACTTCTCATGAGACTTCGGAGTTCTTC
CCCCGGCCTTTACGATCAAACACTACATGTGATGGAGACAAGGAGTCCGAGATTGAGGACGTTGAAACGG
ACAGTGGTAACTCACCTGAAGATTTGAGAAGGGAAATAATGATTGGTCTAGAGTATCAGGCAGAAATTCC
CCCTTATCTTGGCGAGTACAATGGTGACGACGAGAAAGCTTATGAAAATGAGGACCAGTTACTGTGGCAT
CCTGGTGTGCTTTTGGAGAGCAAAGTCAAGGAGTACCTTGTTGAGACCTCATTGAGAACTGGAAATGAAA
AAGTCCTAGACAGGATTTCTTCAGGCACACACACCAGGGATAATGAACAGGCATTATACGAACTTCTCAA
GTGTAACCACAATATAAAAGAAGCAATTGAAAGGTACTGCTGTAATGGAAAGGCATCTCAAGAAGGAATG
ACAGCATGGACGGAAGAGGAGTGCCGAAGCTTTGAACATGCACTGATGCTTCATGGAAAAGATTTTCATC
TCATTCAGAAAGATAAGGTGAGGTCTAGAACGGTTGCCGAGTGCGTAGCCTTCTACTACATGTGGAAGAA
ATCAGAACGCTATGATTACTTTGCTCAACAGACAAAATTTGGAAAGAAACGCTATAACCATCACCCTGGT
GTTACGGACTACATGGATCGTCTCGTAGATGAGACAGAGTCTCTGGGTGGTACCGTCAGTTCTTCAGCCT
TAACTTGTAACCGGCCTGAGCCCGTTCCTGATCAGCCGCTGAACATTCTCAGCTCCTTCACTGCCAGTGA
CCTGACAGCTTTAACCAACAGTGTAGCAACTGTCTGCAACCCCACCGCTGTGAATTGTCTGGATGACAGC
TTTCCTCCGCTGGCCAACACGCCTCGTGGACACGTCAATCATGTGCCTGTCGTAACGGAAGAGTTACTCA
CCCTGCCCAGCAATGGTGAAAGTGATTGTTTTAATTTATTTGAGACTGGATTTTATCACTCAGAGTTAAA
CCCCATGTGCAGCGAAGAATCCGAAAGACCAGCAAAGAGATTGAAGATGGGCATTGCTGTCCCCGAATCC
TTTATGAATGAGGTTTCTGTAAACAACCTGGGTGTAGACTTTGAAAACCATACACATCACATCACCAGTG
CCAAAATGGCTGTCTCTGTAGCTGACTTTGGCAGTTTGTCTGCCAACGAGACAAACGGATTCATCAATGC
CCATAGTCTGCATCAGCACCAGCACGCCGCCCTTCATTCAGAGTGA

Translation (551 aa):
MAEASFGSSSPVGSLSSEDHDFDPTAEMLVHDYDDERTLEEEELMDDGKNFSSEIEDLEKEGNMPLEDLL
AFYGYESTIPAVANSSANSSPSELADELPDMTLDKEEIAKDLLSGDDEETQSSADDLTPSVTSHETSEFF
PRPLRSNTTCDGDKESEIEDVETDSGNSPEDLRREIMIGLEYQAEIPPYLGEYNGDDEKAYENEDQLLWH
PGVLLESKVKEYLVETSLRTGNEKVLDRISSGTHTRDNEQALYELLKCNHNIKEAIERYCCNGKASQEGM
TAWTEEECRSFEHALMLHGKDFHLIQKDKVRSRTVAECVAFYYMWKKSERYDYFAQQTKFGKKRYNHHPG
VTDYMDRLVDETESLGGTVSSSALTCNRPEPVPDQPLNILSSFTASDLTALTNSVATVCNPTAVNCLDDS
FPPLANTPRGHVNHVPVVTEELLTLPSNGESDCFNLFETGFYHSELNPMCSEESERPAKRLKMGIAVPES
FMNEVSVNNLGVDFENHTHHITSAKMAVSVADFGSLSANETNGFINAHSLHQHQHAALHSE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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