CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS26778.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
26778.1 |
Public |
Mus musculus |
13 |
Mtrex |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:72198](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:26778.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:72198](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 26778.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000022281.4 |
ENSMUSP00000022281.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000022281.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000022281.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000022281](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000022281](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_028151.2 |
NP_082427.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_028151.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_082427.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_028151](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_082427](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_082427.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_082427.1 |
1040 |
Q9CZU3 |
1040 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 26778.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3123 nt): ATGGCGGATGCTTTCGGGGATGAGCTTTTCAGCGTTTTCGAGGATGATTCGACCTCTGCAGCAGGAGCCA AGAAAGACAAAGAGAAAGAGAAATGGAAGGGGCCACCAGGGTCTGCAGACAAGGCCGGGAAACGACTGGA TACCAAATTACAATCAGAGTCAGCCAGTGGGGGGAAAAACAAAAGAGATCTAGATGTTGAAGGCACTGAT GAACCTATTTTTGGCAAGAAGCCGAGAATAGAAGACTCAATTAATGAAGATTTAAGCCTGGCGGACCTGA TGCCCAGAGTCAAGGTACAGTCAGTGGAAACAGTTGAAGGCTGCACACATGAGGTCGCTCTTCCTGCAGA TGAGGATTATATACCACTTAAACCTCGAGTTGGGAAGGCAGCAAAGGAATACCCATTCATTCTTGATGCT TTCCAAAGAGAAGCCATTCAGTGTGTTGATAATAACCAGTCTGTGCTAGTATCTGCTCATACGTCAGCAG GGAAGACCGTGTGTGCCGAGTATGCTATTGCATTGGCTTTAAGAGAAAAACAGCGTGTAATATTTACCAG CCCTATTAAGGCTCTAAGTAATCAGAAATACCGTGAAATGTATGAAGAATTTCAAGATGTGGGGCTGATG ACGGGAGATGTTACTATTAATCCCACAGCATCTTGTCTCGTTATGACTACAGAGATTTTGAGAAGTATGC TGTATAGAGGCTCTGAAGTTATGCGAGAAGTTGCTTGGGTCATATTTGATGAAATTCATTACATGAGAGA TTCAGAGCGTGGTGTAGTATGGGAAGAAACTATTATTTTGCTTCCAGATAATGTTCACTATGTCTTTCTT TCGGCTACTATTCCAAATGCTCGACAGTTTGCTGAATGGATTTGTCACCTACATAAACAGCCCTGTCATG TTATTTACACTGATTATCGACCCACTCCACTGCAACACTACATATTTCCAGCAGGGGGAGATGGCCTTCA CCTGGTGGTTGATGAAAATGGTGACTTCAGAGAAGATAATTTTAACACTGCAATGCAAGTGCTGCGGGAT GCAGGTGATTTGGCCAAAGGAGACCAGAAGGGACGGAAAGGAGGAACAAAAGGTCCATCAAATGTGTTCA AGATTGTGAAGATGATTATGGAGAGAAATTTCCAGCCTGTGATCATCTTCAGTTTCAGTAAGAAGGACTG TGAAGCATATGCTCTTCAGATGACGAAGCTAGACTTCAACACAGATGAAGAAAAGAAGATGGTTGAAGAA GTTTTCAATAATGCAATTGACTGCTTGTCTGATGAAGATAAAAAGCTCCCTCAGGTTGAACATGTGCTTC CACTTTTGAAGCGGGGGATTGGTATTCACCATGGTGGCTTACTTCCTATTTTGAAAGAAACTATAGAAAT TCTCTTTTCTGAAGGATTGATAAAGGCTTTATTTGCCACAGAGACTTTTGCTATGGGAATTAACATGCCA GCTAGAACTGTTTTATTTACAAATGCCCGTAAATATGACGGAAAGGACTTCAGATGGATTTCCTCTGGCG AGTACATCCAGATGTCTGGTCGCGCAGGAAGGAGAGGCATGGACGACAGAGGGATTGTGATTCTTATGGT AGACGAGAAGATGAGCCCAACTATTGGAAAGCAGCTGCTTAAGGGGTCAGCTGATCCTCTGAACAGTGCT TTCCATCTGACCTATAACATGGTTTTGAACTTACTAAGAGTAGAAGAAATTAACCCCGAGTACATGCTTG AAAAATCCTTCTACCAGTTTCAGCATTATAGAGCAATTCCAGGGGTCGTAGAAAAGGTAAAGAACTCAGA AGAGCAGTATAATAAAATAGTCATTCCCAATGAAGAAAATGTGGTCATCTATTACAAGATTAGACAGCAA CTTGCCAAGCTGGGAAAAGAGATTGAAGAATATATTCATAAACCAAAGTACTGCTTACCCTTTCTACAGC CAGGCCGTTTGGTAAAGGTGAAAAATGAAGGCGATGATTTCGGCTGGGGAGTAGTAGTGAACTTCTCAAA AAAGTCAAATGTCAAGCCCAATTCTGGCGAACTGGATCCCTTGTATGTGGTGGAAGTCCTCCTGCGCTGT AGCAAGGAAAGCCTGAAGAACTCAGCCACCGAGGCAGCAAAGCCAGCGAAGCCAGACGAGAAAGGGGAGA TGCAGGTTGTTCCAGTTTTGGTGCATCTCCTGTCTGCCATCAGCACTGTCAGGCTCTATATTCCAAAAGA CCTTCGACCTGTGGACAACAGACAGAGTGTCTTAAAATCCATACAGGAAGTTCAAAGGCGCTTTCCCGAC GGCGTTCCTCTGTTAGATCCGATCGATGATATGGGCATCCAAGATCAAGGACTGAAGAAAGTCATCCAGA AAGTAGAGGCCTTTGAGCATCGCATGTACTCACACCCACTCCACAATGATCCTAACTTGGAAACTGTTTA TACACTGTGTGAAAGAAAGGCCCAGATTGCACTAGATATCAAGTCTGCAAAGAGAGAACTGAAGAAGGCA AGAACTGTTCTGCAAATGGACGAGCTCAAATGCCGCAAGCGCGTGCTGAGACGGCTGGGCTTTGCGACAT CGTCGGATGTCATAGAGATGAAAGGACGGGTGGCTTGTGAAATAAGCAGTGCGGACGAGCTCCTTCTAAC GGAGATGATGTTCAATGGGCTTTTCAATGACCTTTCTTCAGAGCAGGCAACCGCACTGTTAAGCTGTTTT GTGTTTCAAGAGAATTCTAGTGAGATGCCCAAACTAACAGAGCAGTTAGCTGGACCACTCCGACAAATGC AGGAATGTGCTAAAAGGATTGCAAAAGTTTCAGCAGAGGCAAAGCTGGAGATTGATGAAGAAACTTACCT AAGCTCATTCAAGCCTCACCTGATGGATGTGGTGTATACCTGGGCAACTGGGGCCACATTTGCCCATATC TGCAAAATGACAGATGTTTTCGAAGGCAGTATAATTCGTTGTATGAGGCGTCTGGAAGAACTGCTTCGAC AGATGTGTCAAGCAGCAAAAGCCATTGGAAACACAGAGCTGGAGAACAAATTTGCTGAAGGAATTACCAA AATCAAGAGGGATATTGTATTTGCTGCCAGCCTCTACTTATAG
Translation (1040 aa): MADAFGDELFSVFEDDSTSAAGAKKDKEKEKWKGPPGSADKAGKRLDTKLQSESASGGKNKRDLDVEGTD EPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDYIPLKPRVGKAAKEYPFILDA FQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM TGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFL SATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRD AGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE VFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP ARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSA FHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQ LAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRC SKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPD GVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKA RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCF VFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHI CKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
|