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Report for CCDS26814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26814.1 Public Mus musculus 14 Cfap20dc 23 108 98 CCDS HistoryNCBI Gene:74430Re-query CCDS DB by CCDS ID:26814.1Re-query CCDS DB by GeneID:74430See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102996.3 ENSMUSP00000100061.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102996.3Link to Ensembl Protein Viewer:ENSMUSP00000100061.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102996Re-query CCDS DB by Protein ID:ENSMUSP00000100061
Original member Current member NCBI NM_028934.3 NP_083210.3 Accepted alive Link to Nucleotide Sequence:NM_028934.3Link to Protein Sequence:NP_083210.3Re-query CCDS DB by Nucleotide ID:NM_028934Re-query CCDS DB by Protein ID:NP_083210Link to BLAST:NP_083210.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083210.3 674 Q6P2K3 674 100% 0 0

Chromosomal Locations for CCDS 26814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 8431606 8431718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8442856 8442950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8473351 8473412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8482417 8482620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8510862 8511193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8515253 8515375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8516451 8516567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8517839 8517992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8518630 8518766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8536518 8536655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8558034 8558190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8578348 8578462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8644397 8644469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8659389 8659482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8662259 8662348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8665978 8665998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2025 nt):
ATGTTCAAAAATGAGTACCAGGGAGGTGCATTTGTTGAAATTTTTAGCGCTCAGGGGAAAAATCCTGGAG
CAAAATGGAAGATCTTGGGCAGTCCGTCTGTGATTTGGAAAGAATTTGATAAAGAAGTTAAAAGTTTTGT
ATTTGTCCTGGAAGGCAGCAGCCAAACCAACAGAATCCAGTTACCGAAGGAGAATAAGCAAATCCTTGGA
CTGATCCAGAGGTTTCTTGTGCTTCAGATTTACATACCCCTGGGACAGGACTTCTCCACTGAATTACTAA
TTACTGATTTAGGAAACATCAAAAGAAGGTTGTATTTATCAACAGTCCATAAGGAAGTGTCTTCAACACC
TCTTCATGCAAAAATCCCACTCTTCATGATCCAGCGTAAAATTTGGTGCAACTTGTGCATTGACCTGGTC
GCCTTCACCAGTGAGATATTCAAAGGAGCAGTTTTCCAGTCGTTGGATGGAATCATCGTCTCTGCTAACT
GTAAGCTGCGGAAGATCTTCACTTTAAAATCAAAGCCTCAAGAGACAGCTGATAAAGATGATGAACCCAC
AGATATTATTCCACGAAGCTGTCAACTTGCAACAGATGTTCCTCATGTTACACAGCTGCTAAACATGACA
AAACTCCGCCAAACTGAAATTAAATTTGGAGGTCATCCTCTAAGATCAGCAGAATCAGAGCAGTTCATCA
GCAGCGGAGCAGGCAGCGTCCAGAACAGTAAAGGTCAAGATGTGTGCCACATCGCCTTCGGATCCAGGGT
TCTTGGACCCCCTCCACTCTCTGGCAGACGGAATAACCTAAGGCAGTCCACTGAGACAGTAAGGTCCATT
CGGTACAAAAATAGCCAATTGTGCCAGCAGCCTACAGAAGAGAGGAGTGTTAACAGTACGGAAGTGTCGG
CCTTGCTGGCTGACCAGCAAGGAGAGAAAGGAAGTGCTCGCCCTTTGAAGCAGACCACACCTCTTCCTGC
CAAGCTACCTATTCCGTATCCACATCCCCCTCAAGAGCCATCAGCAGATAAGGGTAGCAACCGAAGAAGA
CTCCGGCTAAAGAGCAGCAGCGGAGACAGGACAGAGGCGCACTGTGGTTGCTCCTCGGGAAATAACAGGA
GTGAAGAAGATGTTGTCATGGCCCTCAACAGTATCCCACAGCTGAGGACAGAGCCAGTGAGAGCCAGCAC
TCCAGAACCCCCGGCTCCTGAACAACCAGATGAGTGGATATTTCCTGAGAGCGGTGGCCTAACCTCAGAC
CCAGCATGGAGCAGTCCGCCTTTGCTCCTAGATGAAGACTCCCACACTGCCTCGAACCTGTGGCTAGAAA
CCAGCAAGGACAGTGAACATGACCAGGCAGAGGAAACCCAGAGGGCTCCCAAGGACATTTTTACCTTTTC
ATCTAGACCAAGATCAGCGCCTCATGGGAAAAGTCATGATATGTCCCCCAAGGGGTGCCCATTTACTCTG
GACACACAAGACGACAGCCAAGTGACCAAGGAAGACCCCAAGTTGGAAGGCGGCTTCTATGGCAGTGAGA
GCAGCGAAGAGGAATATAACTGGAGAAACTATCAGCCCAGCCAGATGAGCGAATCTGAGCTGCAGATGCT
GGCGAGCCTCCGGCGGCAGCAGAATGAAGACCTGGAGGACACTGGGGCTCCCCATGGCCTGAGCGCGTCT
CAGGTAGACCACTGTAATGTCAGCATCAGTACCAGCAGTGATGACACGACCACGTGGAACTCTTGTCTCC
CACCCCCTGTGAACCAGGGCCGTCACTATCAGAAAGAAATGAATCCACCTTCTCCATCTAACCCTCGAGA
CTGGCTGAACATGTTGAGCCCACCCATTGTCCCTCCCAGTCAGCAGCCAGTGGAACAGTCTCTCGACTCC
TCTGCAAGTCTGAGCGTGCAAGGTGAAGAGGATCCACGTGTGGAAGAAGACGAGGAAGTGCTGACTCTGT
TGTATGACCCATGTCTCAACTGCTACTTTGACCCTCAGACTGGCAAATACTACGAGTTGGTCTAG

Translation (674 aa):
MFKNEYQGGAFVEIFSAQGKNPGAKWKILGSPSVIWKEFDKEVKSFVFVLEGSSQTNRIQLPKENKQILG
LIQRFLVLQIYIPLGQDFSTELLITDLGNIKRRLYLSTVHKEVSSTPLHAKIPLFMIQRKIWCNLCIDLV
AFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPQETADKDDEPTDIIPRSCQLATDVPHVTQLLNMT
KLRQTEIKFGGHPLRSAESEQFISSGAGSVQNSKGQDVCHIAFGSRVLGPPPLSGRRNNLRQSTETVRSI
RYKNSQLCQQPTEERSVNSTEVSALLADQQGEKGSARPLKQTTPLPAKLPIPYPHPPQEPSADKGSNRRR
LRLKSSSGDRTEAHCGCSSGNNRSEEDVVMALNSIPQLRTEPVRASTPEPPAPEQPDEWIFPESGGLTSD
PAWSSPPLLLDEDSHTASNLWLETSKDSEHDQAEETQRAPKDIFTFSSRPRSAPHGKSHDMSPKGCPFTL
DTQDDSQVTKEDPKLEGGFYGSESSEEEYNWRNYQPSQMSESELQMLASLRRQQNEDLEDTGAPHGLSAS
QVDHCNVSISTSSDDTTTWNSCLPPPVNQGRHYQKEMNPPSPSNPRDWLNMLSPPIVPPSQQPVEQSLDS
SASLSVQGEEDPRVEEDEEVLTLLYDPCLNCYFDPQTGKYYELV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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