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Report for CCDS26889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26889.1 Public Mus musculus 14 Lrtm1 23 108 98 CCDS HistoryNCBI Gene:319476Re-query CCDS DB by CCDS ID:26889.1Re-query CCDS DB by GeneID:319476See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055662.3 ENSMUSP00000061828.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055662.3Link to Ensembl Protein Viewer:ENSMUSP00000061828.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000055662Re-query CCDS DB by Protein ID:ENSMUSP00000061828
Original member Current member NCBI NM_176920.4 NP_795894.1 Accepted alive Link to Nucleotide Sequence:NM_176920.4Link to Protein Sequence:NP_795894.1Re-query CCDS DB by Nucleotide ID:NM_176920Re-query CCDS DB by Protein ID:NP_795894Link to BLAST:NP_795894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795894.1 356 Q8BXQ3 356 100% 0 0

Chromosomal Locations for CCDS 26889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 29018567 29018609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29021620 29022216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29027324 29027754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGTTGAATGAGGGTTTGTGCTGCGGAGCCTGGGCCATGAAAGGTACTCTGCTGCTGGTCTCCAGTGTGG
GTCTCCTGCTCCCAGGAGTGGGCAGCTGCCCCATGAAATGTTTGTGCCACCCATCATCAAACTCCGTGGA
CTGCAGTGGTCAGGGGCTGTCAAAGGTCCCCCGTGATTTACCCCCATGGACAGTTACACTGCTCTTACAA
GATAACCGGATCCACTGGCTTCCTGCTCTTGCATTTCAATCTGTATCACTGCTTTCCACCTTAAATTTAT
CTAACAACTCTCTTTCAAATCTGGCTGCAGAGGCTTTCTATGGACTTCCACATTTGCGGGTTTTAAATGT
AACCCAAAATTCCCTGCTTTCCATAGAAAGCAGCTTTGCCCATGCCCTTCCTGGGCTCAGGGAGCTAGAT
CTTTCATCCAACAGCCTCAGGATCCTCCCCACGTCTCTGGGGAAGCCTTGGGAGAACCTGACTGTGTTTG
CTGTGCAGCAGAACCATCTTCTCCATCTGGATCGTGAACTTCTAGAGGCCATGCCCAAGGTGAGGCTGGT
ACTTCTTAAGGACAACCCTTGGATTTGTGACTGCCACTTACTGGGTCTGAAACTCTGGCTGGAGAGATTC
ACCTTTCAAGGGGGAGAAACAGATGGTGCCATCTGCAGGCTGCCTGAACCCTGGCAGGGAAAGGCTCTCC
TCTCCATTCCTCACGAACTGTACCAACCCTGTTCTCTACCTTCTCAGGATTTGGCACCCTCACTAGTCCA
GCAGCCTGGTTCTGCCCCGCAAGATGCCCAGAAGTCTCATGAGAATAGCTCAGGACAGCAAGATCCCTTG
GAGTGTGAGGCCAAACCCAAACCAAAGCCAACCAACCTGCGCCATGCTGTGGCTACTGTGGTCATCACTG
GGGTAGTATGTGGGATCGTATGTCTCATGATGTTGGCGGCTGCTATCTATGGATGTACCTATGCAGCCAT
CACAGCCCAGTACCAAGGGAGACCCTTGGCATCAGCCAGGAAGTCTGAGAAGATGGGAAGTAAGGAACTT
ATGGACAGTTCATCAGCCTGA

Translation (356 aa):
MLNEGLCCGAWAMKGTLLLVSSVGLLLPGVGSCPMKCLCHPSSNSVDCSGQGLSKVPRDLPPWTVTLLLQ
DNRIHWLPALAFQSVSLLSTLNLSNNSLSNLAAEAFYGLPHLRVLNVTQNSLLSIESSFAHALPGLRELD
LSSNSLRILPTSLGKPWENLTVFAVQQNHLLHLDRELLEAMPKVRLVLLKDNPWICDCHLLGLKLWLERF
TFQGGETDGAICRLPEPWQGKALLSIPHELYQPCSLPSQDLAPSLVQQPGSAPQDAQKSHENSSGQQDPL
ECEAKPKPKPTNLRHAVATVVITGVVCGIVCLMMLAAAIYGCTYAAITAQYQGRPLASARKSEKMGSKEL
MDSSSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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