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Report for CCDS269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
269.1 Public Homo sapiens 1 STMN1 24 110 108 CCDS HistoryNCBI Gene:3925Re-query CCDS DB by CCDS ID:269.1Re-query CCDS DB by GeneID:3925See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 269.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357865.6 ENSP00000350531.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357865.6Link to Ensembl Protein Viewer:ENSP00000350531.2Re-query CCDS DB by Nucleotide ID:ENST00000357865Re-query CCDS DB by Protein ID:ENSP00000350531
Original member Current member EBI ENST00000374291.5 ENSP00000363409.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374291.5Link to Ensembl Protein Viewer:ENSP00000363409.1Re-query CCDS DB by Nucleotide ID:ENST00000374291Re-query CCDS DB by Protein ID:ENSP00000363409
Original member Current member EBI ENST00000399728.5 ENSP00000382633.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399728.5Link to Ensembl Protein Viewer:ENSP00000382633.1Re-query CCDS DB by Nucleotide ID:ENST00000399728Re-query CCDS DB by Protein ID:ENSP00000382633
Original member Current member EBI ENST00000455785.7 ENSP00000387858.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000455785.7Link to Ensembl Protein Viewer:ENSP00000387858.2Re-query CCDS DB by Nucleotide ID:ENST00000455785Re-query CCDS DB by Protein ID:ENSP00000387858
Original member Current member NCBI NM_005563.4 NP_005554.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005563.4Link to Protein Sequence:NP_005554.1Re-query CCDS DB by Nucleotide ID:NM_005563Re-query CCDS DB by Protein ID:NP_005554Link to BLAST:NP_005554.1
Original member Current member NCBI NM_203399.2 NP_981944.1 Accepted alive Link to Nucleotide Sequence:NM_203399.2Link to Protein Sequence:NP_981944.1Re-query CCDS DB by Nucleotide ID:NM_203399Re-query CCDS DB by Protein ID:NP_981944Link to BLAST:NP_981944.1
Original member Current member NCBI NM_203401.2 NP_981946.1 Accepted alive Link to Nucleotide Sequence:NM_203401.2Link to Protein Sequence:NP_981946.1Re-query CCDS DB by Nucleotide ID:NM_203401Re-query CCDS DB by Protein ID:NP_981946Link to BLAST:NP_981946.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005554.1 149 P16949-1 149 100% 0 0
NP_981944.1 149 P16949-1 149 100% 0 0
NP_981946.1 149 P16949-1 149 100% 0 0

Chromosomal Locations for CCDS 269.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 25901016 25901087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25901491 25901682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25903641 25903813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25904664 25904676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGCTTCTTCTGATATCCAGGTGAAAGAACTGGAGAAGCGTGCCTCAGGCCAGGCTTTTGAGCTGATTC
TCAGCCCTCGGTCAAAAGAATCTGTTCCAGAATTCCCCCTTTCCCCTCCAAAGAAGAAGGATCTTTCCCT
GGAGGAAATTCAGAAGAAATTAGAAGCTGCAGAAGAAAGACGCAAGTCCCATGAAGCTGAGGTCTTGAAG
CAGCTGGCTGAGAAACGAGAGCACGAGAAAGAAGTGCTTCAGAAGGCAATAGAAGAGAACAACAACTTCA
GTAAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGCTAATAAAGAGAACCGAGAGGCACAAATGGC
TGCCAAACTGGAACGTTTGCGAGAGAAGGATAAGCACATTGAAGAAGTGCGGAAGAACAAAGAATCCAAA
GACCCTGCTGACGAGACTGAAGCTGACTAA

Translation (149 aa):
MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLK
QLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESK
DPADETEAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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