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Report for CCDS26997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26997.1 Public Mus musculus 14 Slc35f4 23 108 98 CCDS HistoryNCBI Gene:75288Re-query CCDS DB by CCDS ID:26997.1Re-query CCDS DB by GeneID:75288See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074368.10 ENSMUSP00000073972.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074368.10Link to Ensembl Protein Viewer:ENSMUSP00000073972.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074368Re-query CCDS DB by Protein ID:ENSMUSP00000073972
Original member Current member NCBI NM_029238.2 NP_083514.1 Accepted alive Link to Nucleotide Sequence:NM_029238.2Link to Protein Sequence:NP_083514.1Re-query CCDS DB by Nucleotide ID:NM_029238Re-query CCDS DB by Protein ID:NP_083514Link to BLAST:NP_083514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083514.1 485 Q8BZK4-1 485 100% 0 0

Chromosomal Locations for CCDS 26997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 49298719 49298960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49300897 49300986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49304170 49304362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49306205 49306330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49313599 49313818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49318708 49319005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49322298 49322483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49525511 49525613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGATGTCAAGGCGGCCCCCAACGGGGTGGCCACCATCGAGGACCGGATCCTGCGGATTACTGGCTACT
ATGGCTATTACCCGGGTTACTCCAGCCAGAAAAGTACCACCAGATCATCAGTTACTCGATGCAAACCAGG
ACCCAACTGCCCCAGTTCACACAGCAGCATCAGCAGGCAACTGTCCCCTCTGTCGGTCACGGAAGATTCT
TCTGCTCCTATTCTTGAACTTCAGAGCCGAGGATCCTCTGGAGTTTGTGGTCGAAGAGTGGAGAGACAGA
GCAGATCAGGGGATGATGGGACACAGACTCGTCCTGAGAGCAGCAGCCAAGAAAACGGACTCAAGGCTCG
ATGCCTGTCCTGCACATCCATGGTTCTGAAGACCATCTGGGGACTCTTGATCATCTTGTCAGTGTCATCA
TCTTGGGTTGGAACCACACAAATTGTAAAAATCACTTACAAGAATTTTTATTGTCCCTTTTTCATGACAT
GGTTTTCAACAAACTGGAACATTATGTTTTTCCCAGTCTATTATTCCGGCCATCTAGCCACAGCTCAAGA
AAAGCAGTCGCCAATAAAAAAATTCAGGGAATGCAGTCGGATTTTTGGTGAAGATGGCCTGACACTGAAG
CTCTTTCTTAAAAGAACTGCTCCTTTTTCTATTCTGTGGACTTTGACAAATTACCTGTATTTGCTGGCTT
TAAAGAAGCTGACGGCCACTGATGTCTCTGCTCTGTTCTGTTGCAACAAAGCCTTTGTCTTCTTGCTGTC
CTGGATTGTGCTGAAGGACAGGTTCATGGGCGTGCGGATTGTCGCAGCAATAATGGCAATTACGGGCATT
GTCATGATGGCGTATGCGGATAATTTCCACGCTGATTCCATCATCGGTGTGGCATTTGCCGTAGGCTCAG
CCTCCACATCTGCACTGTATAAGGTTCTGTTTAAGATGTTTCTGGGCAGTGCCAACTTCGGTGAAGCTGC
ACACTTTGTCTCCACCTTGGGGTTCTTCAATTTGATCTTTATCTCCTTCACTCCCATCATCCTGTATTTC
ACCAAAGTGGAGCACTGGTCCTCCTTCGCAGCGCTGCCCTGGGGCTGCCTCTGTGGGATGGCGGGACTAT
GGCTAGCATTCAACATCCTGGTCAATGTTGGAGTGGTACTGACATACCCAATCCTCATCTCCATTGGGAC
AGTGCTCAGCGTCCCTGGAAACGCAGCTGTAGATCTCCTTAAGCAAGAAGTAATATTCAATGTAGTCCGC
CTGGCTGCCACCATCATCATCTGTATCGGGTTTCTCCTGATGCTACTGCCGGAGGAGTGGGATGAAATTA
CACTGAGATTTATCAACAGCCTGAAGGAGAAGAAGAGTGAGGAGCATGTGGAGGACCTGACAGATGTCAG
CGTGCACCTGAGGAGCAGAAGCAGGGTCAACGGGACAGTGTCCATACCGCTGGCTTGA

Translation (485 aa):
MDVKAAPNGVATIEDRILRITGYYGYYPGYSSQKSTTRSSVTRCKPGPNCPSSHSSISRQLSPLSVTEDS
SAPILELQSRGSSGVCGRRVERQSRSGDDGTQTRPESSSQENGLKARCLSCTSMVLKTIWGLLIILSVSS
SWVGTTQIVKITYKNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPIKKFRECSRIFGEDGLTLK
LFLKRTAPFSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMAITGI
VMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFISFTPIILYF
TKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVGVVLTYPILISIGTVLSVPGNAAVDLLKQEVIFNVVR
LAATIIICIGFLLMLLPEEWDEITLRFINSLKEKKSEEHVEDLTDVSVHLRSRSRVNGTVSIPLA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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