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Report for CCDS27122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27122.1 Public Mus musculus 14 Tm9sf1 23 108 98 CCDS HistoryNCBI Gene:74140Re-query CCDS DB by CCDS ID:27122.1Re-query CCDS DB by GeneID:74140See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002391.14 ENSMUSP00000002391.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002391.14Link to Ensembl Protein Viewer:ENSMUSP00000002391.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002391Re-query CCDS DB by Protein ID:ENSMUSP00000002391
Original member Current member EBI ENSMUST00000121791.7 ENSMUSP00000112764.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121791.7Link to Ensembl Protein Viewer:ENSMUSP00000112764.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121791Re-query CCDS DB by Protein ID:ENSMUSP00000112764
Original member Current member EBI ENSMUST00000120041.7 ENSMUSP00000112893.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120041.7Link to Ensembl Protein Viewer:ENSMUSP00000112893.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120041Re-query CCDS DB by Protein ID:ENSMUSP00000112893
Original member Current member EBI ENSMUST00000122358.7 ENSMUSP00000113782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122358.7Link to Ensembl Protein Viewer:ENSMUSP00000113782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122358Re-query CCDS DB by Protein ID:ENSMUSP00000113782
Original member Current member NCBI NM_001360063.1 NP_001346992.1 Accepted alive Link to Nucleotide Sequence:NM_001360063.1Link to Protein Sequence:NP_001346992.1Re-query CCDS DB by Nucleotide ID:NM_001360063Re-query CCDS DB by Protein ID:NP_001346992Link to BLAST:NP_001346992.1
Original member Current member NCBI NM_028780.3 NP_083056.2 Accepted alive Link to Nucleotide Sequence:NM_028780.3Link to Protein Sequence:NP_083056.2Re-query CCDS DB by Nucleotide ID:NM_028780Re-query CCDS DB by Protein ID:NP_083056Link to BLAST:NP_083056.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346992.1 606 Q9DBU0 606 100% 0 0
NP_083056.2 606 Q9DBU0 606 100% 0 0

Chromosomal Locations for CCDS 27122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55636219 55636612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55637859 55638132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55640385 55640570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55640967 55641588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55642594 55642938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGACAGTCCTAGGGTACCCTCGAAGTTGGAGCTGCCATTGTTTGCCAGTCCTGATACTGTTGCTGGGCA
TAGGCCATGGGCCATGGGTGGAAGGTGTCACACACTACAAGCCCGGCGACCCTGTCATTCTATATGTCAA
CAAAGTGGGACCCTACCATAACCCTCAGGAAACTTACCACTACTATCAGCTTCCAGTCTGCTGTCCTGAG
AAGATCCGCCACAAAAGTCTTAGTTTGGGTGAAGTTCTGGATGGGGACCGAATGGCCGAATCTTTGTACG
AGATCCGCTTTCGGGAGAATGTGGAGAAGAGAATTCTGTGTCACATGCAGCTCAGTTCTGCACAGGTGGA
GCAGCTGCGCCAGGCCATTGAGGAATTGTATTACTTTGAGTTTGTGGTCGATGATTTGCCAATCCGTGGT
TTTGTGGGCTACATGGAAGAGAGTGGCTTCCTGCCACATAGCCACAAGATAGGCCTCTGGACACATTTGG
ACTTCCACCTAGAATTCCATGGAGATCGAATTATATTTGCCAATGTTTCGGTGCGGGACGTCAAGCCCCA
CAGCTTGGATGGGCTGCGGTCTGATGAATTGCTGGGCCTTACTCACACTTACAGTGTGCGCTGGTCTGAG
ACGTCAGTGGAGCATCGGAGTGACAGGCGCCGAGGTGATGATGGAGGCTTCTTTCCTCGAACCCTGGAAA
TCCATTGGTTGTCCATCATCAACTCCATGGTGCTTGTGTTTTTACTGGTGGGTTTTGTGGCTGTTATTCT
AATGCGTGTGCTTCGAAATGACCTGGCTCGGTACAACCTAGACGAAGAGACGAGCTCTGGCGGCTCTAGT
GACGACTTTGACCAGGGCGATAATGGCTGGAAAATTATCCATACAGATGTCTTCCGCTTCCCTCCATACC
GTGGTCTGCTCTGTGCTGTGCTTGGTGTGGGCGCCCAGTTCCTGGCCCTTGGCACTGGCATTATTGTCAT
GGCGTTGCTTGGCATGTTCAACGTGCACCGTCACGGGGCCATTAACTCAGCAGCGATCTTGTTGTATGCC
CTGACCTGCTGCATCTCTGGCTACGTGTCGAGCCACTTCTACCGGCAAATTGGAGGCGAGCGTTGGGTGT
GGAACATCATTCTCACCAGCAGCCTCTTCTCTGTGCCTTTCTTCCTGACTTGGAGTGTGGTGAACTCAGT
GCATTGGGCCAACGGTTCAACACAGGCGCTGCCGGCCACAACCATCCTGCTGCTGCTGACAGTCTGGCTG
CTGGTAGGCTTTCCTCTCACTGTCATTGGCGGCATCTTTGGGAAGAACAACGCTAGTCCCTTTGATGCAC
CTTGTCGCACAAAGAATATCGCCCGGGAGATCCCACCCCAGCCCTGGTACAAGTCTACTGTCATCCACAT
GACTGTTGGTGGCTTCCTGCCTTTCAGCGCCATCTCCGTGGAGCTGTACTACATCTTTGCCACAGTCTGG
GGTCGAGAGCAGTACACTCTGTACGGCATCCTCTTCTTTGTCTTCGCCATCCTGCTGAGTGTGGGGGCCT
GCATCTCCATTGCGCTCACCTACTTCCAGCTGTCTGGGGAAGACTACCGCTGGTGGTGGCGATCCGTGCT
GAGCGTCGGCTCCACCGGCCTCTTCATCTTCCTCTACTCAGTTTTCTACTATGCCCGGCGCTCTAACATG
TCAGGGGCAGTACAGACAGTAGAGTTCTTTGGCTACTCTTTACTGACTGGCTATGTCTTCTTCCTCATGC
TGGGTACCATCTCCTTTTTTTCCTCTTTAAAGTTCATCCGTTATATCTATGTTAACCTCAAGATGGACTG
A

Translation (606 aa):
MTVLGYPRSWSCHCLPVLILLLGIGHGPWVEGVTHYKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCPE
KIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRG
FVGYMEESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSE
TSVEHRSDRRRGDDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETSSGGSS
DDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYA
LTCCISGYVSSHFYRQIGGERWVWNIILTSSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWL
LVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVW
GREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNM
SGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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