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Report for CCDS27142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27142.1 Public Mus musculus 14 Ctsg 23 108 98 CCDS HistoryNCBI Gene:13035Re-query CCDS DB by CCDS ID:27142.1Re-query CCDS DB by GeneID:13035See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015583.1 ENSMUSP00000015583.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015583.1Link to Ensembl Protein Viewer:ENSMUSP00000015583.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000015583Re-query CCDS DB by Protein ID:ENSMUSP00000015583
Original member Current member NCBI NM_007800.2 NP_031826.1 Accepted alive Link to Nucleotide Sequence:NM_007800.2Link to Protein Sequence:NP_031826.1Re-query CCDS DB by Nucleotide ID:NM_007800Re-query CCDS DB by Protein ID:NP_031826Link to BLAST:NP_031826.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031826.1 261 P28293 261 100% 0 0

Chromosomal Locations for CCDS 27142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56099959 56100150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56100543 56100797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56100974 56101109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56101597 56101744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56102382 56102436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGCAGCCTCTCCTGCTCCTGTTGACCTTTATTCTACTCCAAGGAGATGAGGCAGGGAAGATCATTGGAG
GCCGAGAAGCCAGGCCCCATTCCTACCCCTACATGGCATTTCTTCTGATCCAGAGTCCAGAAGGGCTGAG
TGCTTGTGGAGGGTTTCTGGTGCGAGAAGACTTCGTCCTAACAGCAGCTCATTGCTTGGGAAGCTCCATA
AATGTTACTCTAGGGGCCCACAACATCCAAATGCGAGAAAGGACCCAGCAACTCATCACAGTGCTCAGAG
CCATCCGCCATCCTGATTACAATCCGCAGAACATCCGGAATGACATCATGCTTCTGCAGCTGAGGCGCAG
AGCCCGGAGGAGTGGATCGGTGAAGCCTGTGGCTCTGCCTCAGGCCAGCAAAAAACTGCAGCCAGGGGAT
TTGTGCACAGTGGCTGGCTGGGGCCGGGTAAGCCAGAGCAGGGGAACAAATGTACTCCAGGAGGTGCAGC
TAAGAGTGCAGATGGACCAAATGTGCGCCAATCGCTTCCAGTTCTACAACAGCCAGACTCAGATCTGTGT
GGGAAACCCGAGAGAAAGGAAGTCTGCCTTCAGGGGTGATTCTGGTGGCCCCCTGGTATGTAGCAATGTG
GCCCAGGGCATCGTCTCCTATGGAAGCAACAATGGTAACCCTCCAGCTGTATTCACCAAAATCCAGAGCT
TCATGCCCTGGATCAAAAGAACAATGAGACGCTTTGCACCAAGATATCAGAGACCTGCTAACTCCCTGTC
TCAGGCACAGACCTAG

Translation (261 aa):
MQPLLLLLTFILLQGDEAGKIIGGREARPHSYPYMAFLLIQSPEGLSACGGFLVREDFVLTAAHCLGSSI
NVTLGAHNIQMRERTQQLITVLRAIRHPDYNPQNIRNDIMLLQLRRRARRSGSVKPVALPQASKKLQPGD
LCTVAGWGRVSQSRGTNVLQEVQLRVQMDQMCANRFQFYNSQTQICVGNPRERKSAFRGDSGGPLVCSNV
AQGIVSYGSNNGNPPAVFTKIQSFMPWIKRTMRRFAPRYQRPANSLSQAQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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