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Report for CCDS27158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27158.1 Public Mus musculus 14 Lats2 23 108 98 CCDS HistoryNCBI Gene:50523Re-query CCDS DB by CCDS ID:27158.1Re-query CCDS DB by GeneID:50523See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022531.13 ENSMUSP00000022531.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022531.13Link to Ensembl Protein Viewer:ENSMUSP00000022531.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022531Re-query CCDS DB by Protein ID:ENSMUSP00000022531
Original member Current member NCBI NM_015771.2 NP_056586.2 Accepted alive Link to Nucleotide Sequence:NM_015771.2Link to Protein Sequence:NP_056586.2Re-query CCDS DB by Nucleotide ID:NM_015771Re-query CCDS DB by Protein ID:NP_056586Link to BLAST:NP_056586.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056586.2 1042 Q7TSJ6 1042 100% 0 0

Chromosomal Locations for CCDS 27158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 57691288 57691770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57694314 57694420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57696120 57696302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57696916 57697498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57699258 57700558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57702922 57703054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57733878 57734216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGAGGCCAAAGACTTTTCCTGCCACAACTTACTCTGGAAATAGCCGGCAGCGATTGCAAGAGATTCGAG
AGGGGCTGAAGCAGCCATCCAAGGCTTCCACCCAGGGGCTGCTGGTGGGACCAAACAGTGACACTTCCCT
GGATGCCAAAGTCCTGGGGAGCAAAGATGCCTCCAGGCAGCAGCAAATGAGAGCCACCCCGAAGTTTGGA
CCTTATCAAAAAGCTCTCAGGGAAATCCGATATTCCCTCCTGCCTTTTGCCAACGAGTCAGGCACTTCGG
CAGCTGCAGAGGTGAACCGGCAGATGCTTCAGGAGTTGGTGAATGCGGGATGTGACCAGGAGATGGCTGG
CAGAGCGCTCAAGCAGACGGGCAGTAGGAGTATCGAAGCTGCCTTGGAGTACATCAGTAAGATGGGCTAC
CTGGACCCCAGGAATGAGCAGATTGTGCGAGTCATCAAGCAGACCTCCCCAGGAAAGGGCCTGGCGCCCA
CCCCGGTGACTCGGCGGCCCAGTTTCGAGGGCACAGGGGAAGCACTCCCATCCTACCACCAGCTGGGTGG
TGCAAACTACGAGGGCCCCGCCGCACTGGAGGAGATGCCGCGGCAATATTTAGACTTTCTCTTCCCTGGA
GCCGGAGCCGGCACCCACGGTGCCCAGGCTCACCAGCATCCTCCCAAAGGGTACAGCACAGCAGTAGAGC
CAAGTGCGCACTTTCCGGGCACACACTATGGTCGTGGTCATCTACTATCGGAGCAGCCTGGGTATGGGGT
GCAGCGCAGTTCCTCCTTCCAGAACAAGACGCCACCAGATGCCTATTCCAGCATGGCCAAGGCCCAGGGT
GGCCCTCCCGCCAGCCTCACCTTTCCTGCCCATGCTGGGCTGTACACTGCCTCGCACCACAAGCCGGCGG
CTACCCCACCTGGGGCCCACCCATTACATGTGTTGGGCACCCGGGGTCCCACGTTTACTGGCGAAAGCTC
TGCACAGGCTGTGCTGGCACCGTCCAGGAACAGCCTCAATGCTGACTTGTACGAGCTGGGCTCCACGGTG
CCCTGGTCTGCAGCTCCACTGGCACGCCGCGACTCGCTGCAGAAGCAGGGTCTAGAAGCCTCGCGGCCGC
ATGTGGCTTTTCGGGCTGGCCCCAGCAGGACCAACTCCTTCAACAACCCACAACCTGAGCCCTCACTGCC
CGCCCCCAACACGGTCACCGCCGTGACGGCCGCACACATCCTTCACCCTGTGAAGAGCGTGCGTGTGCTG
CGGCCCGAGCCCCAGACAGCCGTGGGGCCCTCGCACCCCGCCTGGGTGGCTGCGCCCACAGCACCTGCCA
CTGAGAGCCTGGAGACGAAGGAGGGCAGCGCAGGCCCACACCCGCTGGATGTGGACTATGGCGGCTCCGA
GCGCAGGTGCCCACCGCCTCCGTACCCAAAGCACTTGCTGCTGCCCAGTAAGTCTGAGCAGTACAGCGTG
GACCTGGACAGCCTGTGCACCAGTGTGCAGCAGAGTCTGCGAGGGGGCACTGAGCAAGACAGGAGTGACA
AGAGCCACAAAGGTGCGAAGGGAGACAAAGCTGGCAGAGACAAAAAGCAGATTCAGACCTCCCCGGTGCC
TGTCCGCAAGAATAGCAGAGATGAAGAGAAGAGAGAGTCTCGCATCAAGAGTTACTCCCCTTATGCCTTC
AAATTCTTCATGGAGCAACACGTGGAGAATGTCATCAAAACCTACCAGCAGAAGGTCAGCCGGAGGCTAC
AGCTGGAGCAGGAAATGGCCAAAGCTGGGCTCTGTGAGGCCGAGCAGGAGCAGATGAGGAAGATCCTCTA
CCAGAAGGAGTCTAACTACAACCGGCTGAAGAGGGCCAAGATGGACAAGTCCATGTTTGTGAAAATCAAG
ACTCTAGGCATCGGTGCCTTTGGGGAAGTGTGCCTCGCTTGTAAGCTGGACACTCACGCTCTGTACGCCA
TGAAGACTCTCAGGAAGAAGGATGTCCTGAACCGGAATCAAGTGGCCCATGTCAAGGCTGAGAGGGACAT
CCTGGCTGAAGCAGACAATGAGTGGGTGGTCAAACTCTACTACTCCTTCCAGGACAAGGACAGCCTGTAC
TTTGTGATGGACTACATACCAGGCGGGGATATGATGAGCCTGCTGATCAGGATGGAGGTCTTCCCTGAGC
ACCTGGCCCGCTTCTACATTGCAGAGTTGACCCTGGCCATTGAAAGTGTCCACAAGATGGGCTTTATCCA
CCGGGACATCAAGCCTGACAACATACTCATCGACCTGGATGGTCATATTAAGCTGACAGATTTTGGCCTC
TGCACTGGATTCAGGTGGACTCACAATTCCAAGTACTACCAGAAAGGGAACCACATGAGACAGGACAGCA
TGGAGCCCGGTGACCTCTGGGACGATGTTTCCAACTGTCGCTGTGGAGACAGGTTAAAGACCCTGGAGCA
GAGGGCGCAGAAGCAGCACCAGAGGTGCCTGGCACATTCTCTTGTCGGGACACCAAATTACATCGCTCCG
GAGGTGCTTCTCCGCAAAGGGTACACGCAGCTCTGTGACTGGTGGAGCGTCGGTGTGATTCTCTTTGAGA
TGCTGGTTGGGCAGCCGCCTTTCTTGGCCCCCACCCCCACAGAGACGCAGCTGAAGGTGATCAACTGGGA
GAGCACGCTGCATATCCCTACGCAGGTGAGGCTCAGCGCTGAGGCCCGAGACCTCATCACGAAGCTGTGC
TGCGCGGCTGACTGCCGCCTGGGCAGGGATGGGGCAGATGACCTCAAGGCACACCCGTTCTTCAACACCA
TCGACTTTTCCCGTGACATCCGAAAGCAGCCTGCACCCTACGTCCCCACCATCAGCCACCCCATGGACAC
CTCCAATTTTGACCCGGTGGATGAAGAAAGCCCCTGGCACGAGGCCAGCGGAGAGAGCGCCAAGGCCTGG
GACACGCTGGCCTCCCCCAGCAGCAAGCATCCAGAGCACGCCTTCTATGAGTTCACCTTCCGCAGGTTCT
TCGATGACAACGGCTATCCCTTCCGGTGCCCGAAGCCCTCAGAGCCCGCAGAGAGTGCAGACCCAGGGGA
TGCGGACTTGGAAGGTGCGGCCGAGGGCTGCCAGCCGGTGTACGTGTAA

Translation (1042 aa):
MRPKTFPATTYSGNSRQRLQEIREGLKQPSKASTQGLLVGPNSDTSLDAKVLGSKDASRQQQMRATPKFG
PYQKALREIRYSLLPFANESGTSAAAEVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMGY
LDPRNEQIVRVIKQTSPGKGLAPTPVTRRPSFEGTGEALPSYHQLGGANYEGPAALEEMPRQYLDFLFPG
AGAGTHGAQAHQHPPKGYSTAVEPSAHFPGTHYGRGHLLSEQPGYGVQRSSSFQNKTPPDAYSSMAKAQG
GPPASLTFPAHAGLYTASHHKPAATPPGAHPLHVLGTRGPTFTGESSAQAVLAPSRNSLNADLYELGSTV
PWSAAPLARRDSLQKQGLEASRPHVAFRAGPSRTNSFNNPQPEPSLPAPNTVTAVTAAHILHPVKSVRVL
RPEPQTAVGPSHPAWVAAPTAPATESLETKEGSAGPHPLDVDYGGSERRCPPPPYPKHLLLPSKSEQYSV
DLDSLCTSVQQSLRGGTEQDRSDKSHKGAKGDKAGRDKKQIQTSPVPVRKNSRDEEKRESRIKSYSPYAF
KFFMEQHVENVIKTYQQKVSRRLQLEQEMAKAGLCEAEQEQMRKILYQKESNYNRLKRAKMDKSMFVKIK
TLGIGAFGEVCLACKLDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDSLY
FVMDYIPGGDMMSLLIRMEVFPEHLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGL
CTGFRWTHNSKYYQKGNHMRQDSMEPGDLWDDVSNCRCGDRLKTLEQRAQKQHQRCLAHSLVGTPNYIAP
EVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWESTLHIPTQVRLSAEARDLITKLC
CAADCRLGRDGADDLKAHPFFNTIDFSRDIRKQPAPYVPTISHPMDTSNFDPVDEESPWHEASGESAKAW
DTLASPSSKHPEHAFYEFTFRRFFDDNGYPFRCPKPSEPAESADPGDADLEGAAEGCQPVYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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