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Report for CCDS272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
272.1 Public Homo sapiens 1 SLC30A2 24 110 108 CCDS HistoryNCBI Gene:7780Re-query CCDS DB by CCDS ID:272.1Re-query CCDS DB by GeneID:7780See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374278.7 ENSP00000363396.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374278.7Link to Ensembl Protein Viewer:ENSP00000363396.3Re-query CCDS DB by Nucleotide ID:ENST00000374278Re-query CCDS DB by Protein ID:ENSP00000363396
Original member Current member NCBI NM_032513.5 NP_115902.1 Accepted alive Link to Nucleotide Sequence:NM_032513.5Link to Protein Sequence:NP_115902.1Re-query CCDS DB by Nucleotide ID:NM_032513Re-query CCDS DB by Protein ID:NP_115902Link to BLAST:NP_115902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115902.1 323 Q9BRI3-1 323 100% 0 0

Chromosomal Locations for CCDS 272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26039160 26039305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26039777 26039911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26041700 26041805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26042549 26042708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26043398 26043551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26044997 26045217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26045847 26045896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGAGGCCAAGGAGAAGCAGCATCTGTTGGACGCCAGGCCGGCAATCCGGTCATACACGGGATCTCTGT
GGCAGGAAGGGGCTGGCTGGATTCCTCTGCCCCGACCTGGCCTGGACTTGCAGGCCATTGAGCTGGCTGC
CCAGAGCAACCATCACTGCCATGCTCAGAAGGGTCCTGACAGTCACTGTGACCCCAAGAAGGGGAAGGCC
CAGCGCCAGCTGTATGTAGCCTCTGCCATCTGCCTGTTGTTCATGATCGGAGAAGTCGTTGAGATCTTGG
GAGCCCTGGTCTCTGTACTGTCCATCTGGGTCGTGACGGGGGTACTGGTGTACCTGGCTGTGGAGCGGCT
GATCTCTGGGGACTATGAAATTGACGGGGGGACCATGCTGATCACGTCGGGCTGCGCTGTGGCTGTGAAC
ATCATAATGGGGTTGACCCTTCACCAGTCTGGCCATGGGCACAGCCACGGCACCACCAACCAGCAGGAGG
AGAACCCCAGCGTCCGAGCTGCCTTCATCCATGTGATCGGCGACTTTATGCAGAGCATGGGTGTCCTAGT
GGCAGCCTATATTTTATACTTCAAGCCAGAATACAAGTATGTAGACCCCATCTGCACCTTCGTCTTCTCC
ATCCTGGTCCTGGGGACAACCTTGACCATCCTGAGAGATGTGATCCTGGTGTTGATGGAAGGGACCCCCA
AGGGCGTTGACTTCACAGCTGTTCGTGATCTGCTGCTGTCGGTGGAGGGGGTAGAAGCCCTGCACAGCCT
GCATATCTGGGCACTGACGGTGGCCCAGCCTGTTCTGTCTGTCCACATCGCCATTGCTCAGAATACAGAC
GCCCAGGCTGTGCTGAAGACAGCCAGCAGCCGCCTCCAAGGGAAGTTCCACTTCCACACCGTGACCATCC
AGATCGAGGACTACTCGGAGGACATGAAGGACTGTCAGGCATGCCAGGGCCCCTCAGACTGA

Translation (323 aa):
MEAKEKQHLLDARPAIRSYTGSLWQEGAGWIPLPRPGLDLQAIELAAQSNHHCHAQKGPDSHCDPKKGKA
QRQLYVASAICLLFMIGEVVEILGALVSVLSIWVVTGVLVYLAVERLISGDYEIDGGTMLITSGCAVAVN
IIMGLTLHQSGHGHSHGTTNQQEENPSVRAAFIHVIGDFMQSMGVLVAAYILYFKPEYKYVDPICTFVFS
ILVLGTTLTILRDVILVLMEGTPKGVDFTAVRDLLLSVEGVEALHSLHIWALTVAQPVLSVHIAIAQNTD
AQAVLKTASSRLQGKFHFHTVTIQIEDYSEDMKDCQACQGPSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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