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Report for CCDS2722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2722.1 Public Homo sapiens 3 TMEM42 24 110 108 CCDS HistoryNCBI Gene:131616Re-query CCDS DB by CCDS ID:2722.1Re-query CCDS DB by GeneID:131616See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2722.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302392.5 ENSP00000306564.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302392.5Link to Ensembl Protein Viewer:ENSP00000306564.4Re-query CCDS DB by Nucleotide ID:ENST00000302392Re-query CCDS DB by Protein ID:ENSP00000306564
Original member Current member NCBI NM_144638.3 NP_653239.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144638.3Link to Protein Sequence:NP_653239.1Re-query CCDS DB by Nucleotide ID:NM_144638Re-query CCDS DB by Protein ID:NP_653239Link to BLAST:NP_653239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653239.1 159 Q69YG0 159 100% 0 0

Chromosomal Locations for CCDS 2722.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 44861925 44862116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44864197 44864343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44865040 44865180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGCCGAGAGGCCGGGGCCTCCGGGCGGCGCCGTGTCCGCGACCGCGTACCCTGACACCCCCGCGGAAT
TCCCTCCGCACCTCCAGGCGGGTGCGATGCGGCGCCGCTTTTGGGGCGTATTCAACTGTCTGTGCGCCGG
CGCGTTCGGGGCCCTGGCCGCCGCCTCCGCCAAGCTGGCCTTCGGCAGCGAGGTGAGCATGGGTTTATGC
GTCTTAGGCATTATTGTGATGGCGAGCACCAATTCTCTGATGTGGACCTTCTTTAGCCGGGGCCTCAGTT
TCTCCATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTTTCAAATATCCTCAGCTCGGCCTTCCTGGG
CTATGTGCTGTATGGAGAGTGCCAGGAGGTCTTGTGGTGGGGAGGAGTGTTCCTTATTCTCTGCGGACTC
ACCCTAATCCACAGGAAGCTCCCACCCACCTGGAAGCCCCTTCCACACAAGCAGCAGTAG

Translation (159 aa):
MAERPGPPGGAVSATAYPDTPAEFPPHLQAGAMRRRFWGVFNCLCAGAFGALAAASAKLAFGSEVSMGLC
VLGIIVMASTNSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFLGYVLYGECQEVLWWGGVFLILCGL
TLIHRKLPPTWKPLPHKQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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