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Report for CCDS2728.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
2728.1 |
Public |
Homo sapiens |
3 |
LARS2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:23395](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:2728.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:23395](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 2728.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000645846.2 |
ENSP00000495093.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000645846.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000495093.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000645846](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000495093](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000642274.1 |
ENSP00000495707.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000642274.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000495707.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000642274](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000495707](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000650792.2 |
ENSP00000498867.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000650792.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000498867.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000650792](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000498867](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001368263.1 |
NP_001355192.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001368263.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001355192.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001368263](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001355192](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001355192.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_015340.4 |
NP_056155.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_015340.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_056155.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_015340](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_056155](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_056155.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 2728.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2712 nt): ATGGCTTCTGTTTGGCAGAGATTGGGTTTTTATGCCTCTCTTCTGAAAAGACAGCTAAATGGTGGGCCAG ATGTCATCAAGTGGGAAAGGAGAGTAATTCCCGGATGTACCAGAAGCATCTACAGTGCCACGGGAAAGTG GACAAAAGAGTATACATTGCAGACAAGAAAGGATGTTGAGAAATGGTGGCATCAACGAATAAAAGAACAG GCCTCCAAAATTTCAGAAGCTGATAAATCGAAGCCAAAATTTTACGTGCTTTCCATGTTCCCTTATCCTT CTGGTAAGCTGCACATGGGCCATGTGCGTGTCTACACCATCAGCGACACCATAGCACGGTTCCAGAAGAT GAGAGGGATGCAGGTCATCAACCCCATGGGATGGGATGCTTTTGGATTGCCTGCTGAAAATGCCGCAGTC GAGAGGAATCTACATCCACAAAGTTGGACACAAAGTAATATTAAACACATGAGGAAACAGCTTGATCGTC TGGGCCTGTGTTTCAGCTGGGATAGGGAAATAACTACGTGTTTGCCAGATTACTACAAGTGGACTCAGTA TCTCTTTATTAAACTGTATGAGGCTGGGCTGGCCTATCAAAAGGAGGCCCTGGTTAACTGGGACCCAGTG GATCAAACAGTGCTTGCCAATGAGCAGGTGGATGAACATGGCTGTTCATGGCGTTCTGGAGCAAAGGTGG AACAGAAGTACCTCAGACAATGGTTTATTAAGACAACCGCTTATGCAAAGGCCATGCAGGACGCGTTGGC AGACCTTCCAGAATGGTATGGAATAAAAGGCATGCAAGCCCACTGGATTGGGGACTGTGTGGGCTGCCAC CTGGACTTCACATTAAAGGTTCATGGGCAAGCCACGGGCGAAAAGCTGACTGCCTATACGGCCACCCCTG AAGCCATTTATGGCACCTCCCACGTGGCCATCTCGCCCAGCCACAGACTCCTACATGGGCACAGCTCTCT GAAGGAAGCCTTGAGGATGGCCCTTGTCCCTGGCAAAGATTGCCTCACGCCTGTAATGGCTGTGAACATG CTTACCCAGCAGGAGGTCCCTGTCGTTATTTTGGCCAAAGCTGACTTGGAAGGCTCTCTGGATTCAAAAA TAGGAATTCCCAGTACTAGCTCAGAGGACACCATCTTAGCCCAAACCCTGGGCCTGGCCTACTCTGAAGT CATTGAAACTTTGCCAGATGGCACAGAGAGACTGAGCAGCTCTGCTGAGTTCACAGGTATGACCCGGCAG GATGCTTTTCTAGCCCTGACTCAGAAAGCCCGGGGGAAGAGAGTGGGTGGAGACGTGACAAGTGATAAAC TGAAAGACTGGCTGATTTCACGGCAGCGGTACTGGGGCACACCAATCCCCATTGTCCACTGCCCAGTCTG TGGCCCCACACCTGTGCCCCTGGAGGACTTGCCTGTGACCCTGCCCAACATCGCGTCTTTCACTGGCAAG GGAGGCCCCCCACTGGCCATGGCTTCAGAGTGGGTGAACTGCTCCTGCCCAAGGTGCAAGGGAGCAGCCA AGAGAGAGACAGACACGATGGATACCTTTGTTGATTCTGCTTGGTACTACTTCAGATACACTGACCCTCA TAATCCACACAGCCCTTTTAACACAGCAGTGGCCGATTACTGGATGCCTGTGGATTTGTACATTGGAGGG AAAGAACATGCCGTCATGCACTTGTTCTATGCAAGATTCTTTAGTCATTTTTGCCATGATCAAAAAATGG TTAAACATAGGGAGCCTTTTCATAAGCTGCTGGCCCAAGGCCTTATCAAGGGGCAGACATTCCGCCTACC ATCTGGACAGTATCTACAGAGAGAGGAAGTGGATCTCACAGGTTCCGTTCCTGTTCATGCAAAAACGAAA GAGAAGTTAGAGGTGACGTGGGAGAAGATGAGTAAGTCCAAACACAACGGGGTGGACCCAGAGGAAGTTG TGGAGCAGTATGGGATCGACACGATTCGGCTCTACATCCTTTTTGCTGCCCCTCCTGAGAAGGATATCTT GTGGGATGTGAAAACTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAACGACTGTGGACCTTGACAACT CGGTTTATTGAGGCCAGGGCTTCTGGGAAGTCTCCCCAGCCTCAGCTGCTGAGTAACAAGGAGAAAGCTG AGGCCAGGAAGCTCTGGGAGTACAAGAACTCCGTCATCTCTCAGGTGACCACCCATTTCACAGAGGACTT CTCACTGAATTCTGCAATTTCTCAGCTGATGGGACTCAGCAATGCCCTCTCGCAAGCCTCTCAGAGCGTC ATTCTCCACAGCCCCGAGTTTGAGGATGCTTTGTGTGCCCTGATGGTAATGGCTGCTCCACTGGCCCCTC ATGTAACCTCAGAGATCTGGGCAGGCCTGGCGCTGGTGCCGAGGAAGCTCTGTGCCCACTACACTTGGGA TGCCAGTGTGCTGCTCCAGGCATGGCCTGCTGTGGACCCGGAGTTCCTGCAGCAGCCTGAGGTTGTCCAG ATGGCAGTTCTGATCAACAATAAAGCTTGTGGCAAAATTCCTGTGCCCCAACAAGTTGCCCGGGACCAGG ACAAAGTCCACGAATTTGTTCTTCAAAGCGAGCTGGGTGTCAGGCTTTTGCAAGGACGAAGCATCAAGAA GTCCTTCCTTTCCCCGAGAACTGCCCTCATCAACTTCCTGGTGCAAGATTGA
Translation (903 aa): MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVEKWWHQRIKEQ ASKISEADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENAAV ERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEAGLAYQKEALVNWDPV DQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAKAMQDALADLPEWYGIKGMQAHWIGDCVGCH LDFTLKVHGQATGEKLTAYTATPEAIYGTSHVAISPSHRLLHGHSSLKEALRMALVPGKDCLTPVMAVNM LTQQEVPVVILAKADLEGSLDSKIGIPSTSSEDTILAQTLGLAYSEVIETLPDGTERLSSSAEFTGMTRQ DAFLALTQKARGKRVGGDVTSDKLKDWLISRQRYWGTPIPIVHCPVCGPTPVPLEDLPVTLPNIASFTGK GGPPLAMASEWVNCSCPRCKGAAKRETDTMDTFVDSAWYYFRYTDPHNPHSPFNTAVADYWMPVDLYIGG KEHAVMHLFYARFFSHFCHDQKMVKHREPFHKLLAQGLIKGQTFRLPSGQYLQREEVDLTGSVPVHAKTK EKLEVTWEKMSKSKHNGVDPEEVVEQYGIDTIRLYILFAAPPEKDILWDVKTDALPGVLRWQQRLWTLTT RFIEARASGKSPQPQLLSNKEKAEARKLWEYKNSVISQVTTHFTEDFSLNSAISQLMGLSNALSQASQSV ILHSPEFEDALCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQ MAVLINNKACGKIPVPQQVARDQDKVHEFVLQSELGVRLLQGRSIKKSFLSPRTALINFLVQD
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