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Report for CCDS27354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27354.1 Public Mus musculus 14 Itgbl1 23 108 98 CCDS HistoryNCBI Gene:223272Re-query CCDS DB by CCDS ID:27354.1Re-query CCDS DB by GeneID:223272See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049681.13 ENSMUSP00000059019.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049681.13Link to Ensembl Protein Viewer:ENSMUSP00000059019.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049681Re-query CCDS DB by Protein ID:ENSMUSP00000059019
Original member Current member NCBI NM_145467.2 NP_663442.2 Accepted alive Link to Nucleotide Sequence:NM_145467.2Link to Protein Sequence:NP_663442.2Re-query CCDS DB by Nucleotide ID:NM_145467Re-query CCDS DB by Protein ID:NP_663442Link to BLAST:NP_663442.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663442.2 494 Q8VDV0-1 494 100% 0 0

Chromosomal Locations for CCDS 27354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 123660309 123660406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123661291 123661508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123827752 123827898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123840563 123840685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123843797 123843937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123846439 123846579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123857433 123857579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123954571 123954687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123966631 123966777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123972118 123972231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 123973285 123973376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGCATCCTCCAGGCTTCAGGAACTTCTTGTTGCTGGTGTCCTCCCTTCTCTTCATTGGGCTGTCAGCTG
CTCCTCAAAGCTTCTTACCATCTCTGAGAAGCCTGTCGGGCGCCCCCTGCAGGCTGTCCCGGGCAGAGTC
CGAACGCAGATGTCGTGCACCTGGGCAGCCCCCAGGGAGCGCTCTGTGCCATGACCGTGGCCGGTGCGAG
TGTGGGGTCTGCATCTGTCACGTGACCGAACCTGGCACCTACTTCGGTCCACTGTGTGAGTGCCATGAGT
GGATATGCGAGACCTACGACGGGAAAACCTGTGCAGGCCACGGTAATTGTGACTGCGGCAAGTGCAAGTG
TGATGTGGGATGGTCTGGGGAAGCTTGTCAGTACCCAACCAAGTGTGACCTGACCAAAAAAATCAGCAAC
CAGATGTGCAAGAACTCCCAAGATGTCATCTGCTCCAATGCAGGTACATGTCACTGTGGCAGGTGTAAGT
GTGATAATTCAGATGGACATGGACTCATTTATGGTAAATTTTGTGAATGTGATGATAGAGAATGCATAGA
TGATGAAACAGAAGAAGTATGTGGAGGCCATGGGAAGTGTTACTGTGGAAACTGTTACTGTGAGGCTGGT
TGGCATGGCGATAAATGCGAGTTCCAGTGTGACATCACCCCATGGGAAAGCAAGCGAAGATGCACATCTC
CAGATGGCAAAGTCTGTAGCAACAGAGGAACATGTGTATGTGGTGAATGTTCTTGCCATGATGTTGATCC
AACTGGGGACTGGGGAGACATTCATGGGGACACGTGTGAGTGTGATGAAAGGGACTGCAGAGCTGTTTAT
GATCGATACTCTGATGATTTCTGTTCAGGTCATGGGCAGTGTAACTGTGGAAGATGTGACTGCAGAGCAG
GCTGGTATGGGAAGAAATGTGAGCACCCAAGGAATTGCCCATTGTCAGCTGAGGAGAGCACCAAGAAGTG
CCAGGGTAGTTCTGATCTTCCTTGCTCTGGAAGGGGCAGATGCGAATGTGGCAGATGCACTTGTTACCCT
CCTGGGGACAGCAGAGTCTATGGCAAGACCTGTGAGTGTGATGACCGGCGCTGCGAGGACCTGGATGGTG
TGGTCTGCGGAGGCCATGGCATGTGCTCCTGTGGTCGCTGTGTTTGTGAGAAAGGATGGTTTGGTAAGCT
CTGCCAACACCTGCGGAAGTGTAATATGACAGAAGAACAAAGCAGGAGTCTGTGTGAGTCAGCAGATGGC
ACATTGTGCTCAGGGAAGGGTTCTTGTCATTGTGGAAAGTGCATTTGTTCTGGAGAAGAGTGGTATATTT
CAGGGGAGTTTTGTGACTGTGATGACAGAGACTGTGACAAACACGATGGTCTCATTTGCACAGGGAATGG
AATCTGTAGCTGTGGAAACTGTGAATGCTGGGATGGATGGAATGGAAATGCATGTGAAATCTGGCTTGGT
ACCGAATATCCTTAA

Translation (494 aa):
MHPPGFRNFLLLVSSLLFIGLSAAPQSFLPSLRSLSGAPCRLSRAESERRCRAPGQPPGSALCHDRGRCE
CGVCICHVTEPGTYFGPLCECHEWICETYDGKTCAGHGNCDCGKCKCDVGWSGEACQYPTKCDLTKKISN
QMCKNSQDVICSNAGTCHCGRCKCDNSDGHGLIYGKFCECDDRECIDDETEEVCGGHGKCYCGNCYCEAG
WHGDKCEFQCDITPWESKRRCTSPDGKVCSNRGTCVCGECSCHDVDPTGDWGDIHGDTCECDERDCRAVY
DRYSDDFCSGHGQCNCGRCDCRAGWYGKKCEHPRNCPLSAEESTKKCQGSSDLPCSGRGRCECGRCTCYP
PGDSRVYGKTCECDDRRCEDLDGVVCGGHGMCSCGRCVCEKGWFGKLCQHLRKCNMTEEQSRSLCESADG
TLCSGKGSCHCGKCICSGEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLG
TEYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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