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Report for CCDS2736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2736.1 Public Homo sapiens 3 XCR1 24 110 108 CCDS HistoryNCBI Gene:2829Re-query CCDS DB by CCDS ID:2736.1Re-query CCDS DB by GeneID:2829See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 2736.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309285.4 ENSP00000310405.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309285.4Link to Ensembl Protein Viewer:ENSP00000310405.3Re-query CCDS DB by Nucleotide ID:ENST00000309285Re-query CCDS DB by Protein ID:ENSP00000310405
Original member Current member EBI ENST00000683768.1 ENSP00000507745.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683768.1Link to Ensembl Protein Viewer:ENSP00000507745.1Re-query CCDS DB by Nucleotide ID:ENST00000683768Re-query CCDS DB by Protein ID:ENSP00000507745
Original member Current member NCBI NM_001024644.2 NP_001019815.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001024644.2Link to Protein Sequence:NP_001019815.1Re-query CCDS DB by Nucleotide ID:NM_001024644Re-query CCDS DB by Protein ID:NP_001019815Link to BLAST:NP_001019815.1
Original member Current member NCBI NM_001381860.1 NP_001368789.1 Accepted alive Link to Nucleotide Sequence:NM_001381860.1Link to Protein Sequence:NP_001368789.1Re-query CCDS DB by Nucleotide ID:NM_001381860Re-query CCDS DB by Protein ID:NP_001368789Link to BLAST:NP_001368789.1
Original member Current member NCBI NM_005283.3 NP_005274.1 Accepted alive Link to Nucleotide Sequence:NM_005283.3Link to Protein Sequence:NP_005274.1Re-query CCDS DB by Nucleotide ID:NM_005283Re-query CCDS DB by Protein ID:NP_005274Link to BLAST:NP_005274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019815.1 333 P46094 333 100% 0 0
NP_001368789.1 333 P46094 333 100% 0 0
NP_005274.1 333 P46094 333 100% 0 0

Chromosomal Locations for CCDS 2736.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 46020946 46021947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGAGTCCTCAGGCAACCCAGAGAGCACCACCTTTTTTTACTATGACCTTCAGAGCCAGCCGTGTGAGA
ACCAGGCCTGGGTCTTTGCTACCCTCGCCACCACTGTCCTATACTGCCTGGTGTTTCTCCTCAGCCTAGT
GGGCAACAGCCTGGTCCTGTGGGTCCTGGTGAAGTATGAGAGCCTGGAGTCCCTCACCAACATCTTCATC
CTCAACCTGTGCCTCTCAGACCTGGTGTTCGCCTGCTTGTTGCCTGTGTGGATCTCCCCATACCACTGGG
GCTGGGTGCTGGGAGACTTCCTCTGCAAACTCCTCAATATGATCTTCTCCATCAGCCTCTACAGCAGCAT
CTTCTTCCTGACCATCATGACCATCCACCGCTACCTGTCGGTAGTGAGCCCCCTCTCCACCCTGCGCGTC
CCCACCCTCCGCTGCCGGGTGCTGGTGACCATGGCTGTGTGGGTAGCCAGCATCCTGTCCTCCATCCTCG
ACACCATCTTCCACAAGGTGCTTTCTTCGGGCTGTGATTATTCCGAACTCACGTGGTACCTCACCTCCGT
CTACCAGCACAACCTCTTCTTCCTGCTGTCCCTGGGGATTATCCTGTTCTGCTACGTGGAGATCCTCAGG
ACCCTGTTCCGCTCACGCTCCAAGCGGCGCCACCGCACGGTCAAGCTCATCTTCGCCATCGTGGTGGCCT
ACTTCCTCAGCTGGGGTCCCTACAACTTCACCCTGTTTCTGCAGACGCTGTTTCGGACCCAGATCATCCG
GAGCTGCGAGGCCAAACAGCAGCTAGAATACGCCCTGCTCATCTGCCGCAACCTCGCCTTCTCCCACTGC
TGCTTTAACCCGGTGCTCTATGTCTTCGTGGGGGTCAAGTTCCGCACACACCTGAAACATGTTCTCCGGC
AGTTCTGGTTCTGCCGGCTGCAGGCACCCAGCCCAGCCTCGATCCCCCACTCCCCTGGTGCCTTCGCCTA
TGAGGGCGCCTCCTTCTACTGA

Translation (333 aa):
MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYESLESLTNIFI
LNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFLTIMTIHRYLSVVSPLSTLRV
PTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSELTWYLTSVYQHNLFFLLSLGIILFCYVEILR
TLFRSRSKRRHRTVKLIFAIVVAYFLSWGPYNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHC
CFNPVLYVFVGVKFRTHLKHVLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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