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Report for CCDS27376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27376.1 Public Mus musculus 15 Il7r 23 108 98 CCDS HistoryNCBI Gene:16197Re-query CCDS DB by CCDS ID:27376.1Re-query CCDS DB by GeneID:16197See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27376.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003981.5 ENSMUSP00000003981.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003981.5Link to Ensembl Protein Viewer:ENSMUSP00000003981.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000003981Re-query CCDS DB by Protein ID:ENSMUSP00000003981
Original member Current member NCBI NM_008372.4 NP_032398.3 Accepted alive Link to Nucleotide Sequence:NM_008372.4Link to Protein Sequence:NP_032398.3Re-query CCDS DB by Nucleotide ID:NM_008372Re-query CCDS DB by Protein ID:NP_032398Link to BLAST:NP_032398.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032398.3 459 P16872 459 100% 0 0

Chromosomal Locations for CCDS 27376.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 9507855 9508358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9508707 9508782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9510166 9510259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9511111 9511279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9512885 9513042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9516335 9516492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9525054 9525192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9529661 9529742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGATGGCTCTGGGTAGAGCTTTCGCTATAGTTTTCTGCTTAATTCAAGCTGTTTCTGGAGAAAGTGGAA
ATGCCCAGGATGGAGACCTAGAAGATGCAGACGCGGACGATCACTCCTTCTGGTGCCACAGCCAGTTGGA
AGTGGATGGAAGTCAACATTTATTGACTTGTGCTTTTAATGACTCAGACATCAACACAGCTAATCTGGAA
TTTCAAATATGTGGGGCTCTTTTACGAGTGAAATGCCTAACTCTTAACAAGCTGCAAGATATATATTTTA
TAAAGACATCAGAATTCTTACTGATTGGTAGCAGCAATATATGTGTGAAGCTTGGACAAAAGAATTTAAC
TTGCAAAAATATGGCTATAAACACAATAGTTAAAGCCGAGGCTCCCTCTGACCTGAAAGTCGTTTATCGC
AAAGAAGCAAATGATTTTTTGGTGACATTTAATGCACCTCACTTGAAAAAGAAATATTTAAAAAAAGTAA
AGCATGATGTGGCCTACCGCCCAGCAAGGGGTGAAAGCAACTGGACGCATGTATCTTTATTCCACACAAG
AACAACAATCCCACAGAGAAAACTACGACCAAAAGCAATGTATGAAATCAAAGTCCGATCCATTCCCCAT
AACGATTACTTCAAAGGCTTCTGGAGCGAGTGGAGTCCAAGTTCTACCTTCGAAACTCCAGAACCCAAGA
ATCAAGGAGGATGGGATCCTGTCTTGCCAAGTGTCACCATTCTGAGTTTGTTCTCTGTGTTTTTGTTGGT
CATCTTAGCCCATGTGCTATGGAAAAAAAGGATTAAACCTGTCGTATGGCCTAGTCTCCCCGATCATAAG
AAAACTCTGGAACAACTATGTAAGAAGCCAAAAACGAGTCTGAATGTGAGTTTCAATCCCGAAAGTTTCC
TGGACTGCCAGATTCATGAGGTGAAAGGCGTTGAAGCCAGGGACGAGGTGGAAAGTTTTCTGCCCAATGA
TCTTCCTGCACAGCCAGAGGAGTTGGAGACACAGGGACACAGAGCCGCTGTACACAGTGCAAACCGCTCG
CCTGAGACTTCAGTCAGCCCACCAGAAACAGTTAGAAGAGAGTCACCCTTAAGATGCCTGGCTAGAAATC
TGAGTACCTGCAATGCCCCTCCACTCCTTTCCTCTAGGTCCCCTGACTACAGAGATGGTGACAGAAATAG
GCCTCCTGTGTATCAAGACTTGCTGCCAAACTCTGGAAACACAAATGTCCCTGTCCCTGTCCCTCAACCA
TTGCCTTTCCAGTCGGGAATCCTGATACCAGTTTCTCAGAGACAGCCCATCTCCACTTCCTCAGTACTGA
ATCAAGAAGAAGCGTATGTCACCATGTCTAGTTTTTACCAAAACAAATGA

Translation (459 aa):
MMALGRAFAIVFCLIQAVSGESGNAQDGDLEDADADDHSFWCHSQLEVDGSQHLLTCAFNDSDINTANLE
FQICGALLRVKCLTLNKLQDIYFIKTSEFLLIGSSNICVKLGQKNLTCKNMAINTIVKAEAPSDLKVVYR
KEANDFLVTFNAPHLKKKYLKKVKHDVAYRPARGESNWTHVSLFHTRTTIPQRKLRPKAMYEIKVRSIPH
NDYFKGFWSEWSPSSTFETPEPKNQGGWDPVLPSVTILSLFSVFLLVILAHVLWKKRIKPVVWPSLPDHK
KTLEQLCKKPKTSLNVSFNPESFLDCQIHEVKGVEARDEVESFLPNDLPAQPEELETQGHRAAVHSANRS
PETSVSPPETVRRESPLRCLARNLSTCNAPPLLSSRSPDYRDGDRNRPPVYQDLLPNSGNTNVPVPVPQP
LPFQSGILIPVSQRQPISTSSVLNQEEAYVTMSSFYQNK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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