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Report for CCDS27378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27378.1 Public Mus musculus 15 Agxt2 23 108 98 CCDS HistoryNCBI Gene:268782Re-query CCDS DB by CCDS ID:27378.1Re-query CCDS DB by GeneID:268782See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022858.7 ENSMUSP00000022858.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022858.7Link to Ensembl Protein Viewer:ENSMUSP00000022858.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022858Re-query CCDS DB by Protein ID:ENSMUSP00000022858
Original member Current member NCBI NM_001031851.1 NP_001027021.1 Accepted alive Link to Nucleotide Sequence:NM_001031851.1Link to Protein Sequence:NP_001027021.1Re-query CCDS DB by Nucleotide ID:NM_001031851Re-query CCDS DB by Protein ID:NP_001027021Link to BLAST:NP_001027021.1

Chromosomal Locations for CCDS 27378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 10358597 10358681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10371599 10371687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10373684 10373868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10377375 10377498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10378798 10378892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10380603 10380696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10381334 10381455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10388131 10388287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10388790 10388882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10391910 10392042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10393715 10393806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10399014 10399163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10400447 10400545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10409450 10409557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGTCTCTAGCCTGGAGAAATTTGCAGAAACCCTTTTATCTGGAGACTTCTCTCAGAATACTCCAGATGC
GTCCATCCCTGAGCTTAGGTGCTTCCCGGATAGCTGTGCCCAAGCTCACTCTTCATACAAAGCACAGCAT
GCCACCGTGTGACTTCTCACCTGAGAAATACCAGTCCCTGGCCTACAGCCGTGTGCTGGCGATTCACAAG
CAGCATCTTTCTCCTGTGGATACAGCCTATTTCCGGAAGCCTTTGCTACTCCACCAGGGACACATGGAGT
GGCTCTTTGATTCTGAGGGAAACAGATACCTGGACTTCTTCTCTGGGATTGTCACTGTTAGTGTTGGTCA
CTGCCACCCGAAGGTAAGTGCAGTGGCAAAAAAACAGATAGACCGCCTGTGGCATACAAGTTCTGTCTTC
TTCCACTCTCCGATGCATGAATATGCAGAGAAGCTCTCAGCACTCCTTCCTGAGCCTCTTAAGGTCATTT
TCTTGGTGAACAGTGGATCAGAAGCCAACGACCTGGCCATGGTGATGGCCCGAGCACACTCGAATCACAC
AGACATCATATCTTTCAGAGGAGCCTATCACGGATGCAGTCCCTATACACTTGGCCTGACAAATGTCGGA
ATCTACAAGATGGAAGTCCCTGGTGGGATAGGCTGCCAATCAACAATGTGCCCAGATGTTTTCCGTGGCC
CTTGGGGAGGAATCCATTGTCGAGATTCTCCAGTGCAAACAGTGAGGGACTGCAGCTGTGCTCCAGGTCC
AAATGGGCAGGGAGGAAGGCGAGAATGCCATTCTAACATCAAATGCTGTGACTTGTGTATGTGTGTATGT
TTTGCTACAGACTGCTGCCAAGCTAAAGAACGGTATATCGAACAATTCAAAGACACACTGAACACTTCTG
TGGCCACATCAATTGCTGGATTTTTTGCAGAGCCAATTCAAGGTGTGAATGGTGTTGTCCAGTACCCAAA
GGAGTTTCTGAAGGAAGCCTTTGCGTTGGTCCGAGAGCGGGGAGGTGTGTGCATCGCAGATGAAGTGCAG
ACAGGCTTTGGCAGGCTGGGCTCTCACTTCTGGGGTTTCCAGACACATGATGTACTTCCTGACATTGTCA
CCATGGCTAAAGGGATTGGAAATGGCTTCCCCATGGCTGCAGTTGTGACCACTCCAGAAATTGCGAAGTC
TTTGGCTAAACGTTTGCTTCACTTCAGCACATTTGGAGGAAATCCCCTGGCCTGCGCCATTGGATCTGCT
GTGCTTGAGGTGATTGAAGAAGAAAATCTCCAGAGAAACAGTCAAGAAGTTGGCACCTACATGCTGCTGA
AGTTTGCTAAGCTTCGGGACGAATTTGATATCGTTGGGGATGTCCGAGGCAAAGGCCTTATGGTGGGGAT
AGAGATGGTTCAAGACAAGATAAGCCGACAACCTCTTCCTAAAACAGAAGTCAATCAAATCCATGAGGAC
TGCAAAGACATGGGGCTCCTAGTGGGTAGAGGTGGTAATTTTTCTCAGACTTTTCGAATTGTGCCCCCGA
TGTGTGTCACGAAGATGGAAGTAGATTTTGCATATGAAGTATTTCGAGCTGCCTTAATTCAACACATGGA
GAGAAGAGCTAAGTAA

Translation (541 aa):
MSLAWRNLQKPFYLETSLRILQMRPSLSLGASRIAVPKLTLHTKHSMPPCDFSPEKYQSLAYSRVLAIHK
QHLSPVDTAYFRKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVSVGHCHPKVSAVAKKQIDRLWHTSSVF
FHSPMHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMVMARAHSNHTDIISFRGAYHGCSPYTLGLTNVG
IYKMEVPGGIGCQSTMCPDVFRGPWGGIHCRDSPVQTVRDCSCAPGPNGQGGRRECHSNIKCCDLCMCVC
FATDCCQAKERYIEQFKDTLNTSVATSIAGFFAEPIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQ
TGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPEIAKSLAKRLLHFSTFGGNPLACAIGSA
VLEVIEEENLQRNSQEVGTYMLLKFAKLRDEFDIVGDVRGKGLMVGIEMVQDKISRQPLPKTEVNQIHED
CKDMGLLVGRGGNFSQTFRIVPPMCVTKMEVDFAYEVFRAALIQHMERRAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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