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Report for CCDS27475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27475.1 Public Mus musculus 15 Deptor 23 108 98 CCDS HistoryNCBI Gene:97998Re-query CCDS DB by CCDS ID:27475.1Re-query CCDS DB by GeneID:97998See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023056.7 ENSMUSP00000023056.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023056.7Link to Ensembl Protein Viewer:ENSMUSP00000023056.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023056Re-query CCDS DB by Protein ID:ENSMUSP00000023056
Original member NCBI NM_001037937.3 NP_001033026.1 Updated not alive Link to Nucleotide Sequence:NM_001037937.3Link to Protein Sequence:NP_001033026.1Re-query CCDS DB by Nucleotide ID:NM_001037937Re-query CCDS DB by Protein ID:NP_001033026
Current member NCBI NM_001037937.4 NP_001033026.1 Accepted alive Link to Nucleotide Sequence:NM_001037937.4Link to Protein Sequence:NP_001033026.1Re-query CCDS DB by Nucleotide ID:NM_001037937Re-query CCDS DB by Protein ID:NP_001033026Link to BLAST:NP_001033026.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033026.1 397 Q570Y9-2 397 100% 0 0

Chromosomal Locations for CCDS 27475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 55133475 55133560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55149341 55149519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55151788 55151911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55180865 55181043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55208731 55208916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55212192 55212326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55215488 55215558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55218169 55218273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55252007 55252135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGAAACAAGCCTTCCTGGTGGTTCTCAGGCATTCTATCTCTGAGGATCGACTTCCTCCTCTGAGTGTAA
TAACCTCAGGCTGCAGGCTGCGGCTCCATGAAGAAAAGGTTATTAAAGATAGACGGCACCATCTCAAAAC
CTACCCAAACTGCTTTGTTGCAAAAGAGCTGATTGACTGGCTCATTGAACATAAGGAGGCCTCTGACCGA
GAGACGGCGATAAAACTCATGCAGAAATTAGCCGACCGGGGCATCATTCATCACGTGTGTGATGAGCACA
AGGAATTCAAGGATGTAAAACTCTTCTACCGCTTTAGGAAGGATGATGGGACCTTTGCACTGGACAGTGA
GGTGAAGGCCTTCATGAGAGGACAGAGGCTCTATGAAAAACTGATGAGCCCTGAAACTACACTCCTCCAG
CCTAGAGAGGAGGAGGGGGTGAAGTATGAGCGGACCTTCATGGCATCCGAATTCCTGGACTGGTTGGTTC
AGGAAGGTGAAGCCACAACAAGGAAAGAGGCAGAGCAGCTTTGCCACCGGCTTATGGACCATGGGATCAT
CCAGCATGTGTCTAACAAGCACCCGTTTGTGGACAGCAACCTCCTCTACCAGTTCAGAATGAACTTCCGT
CGGAGGCGGAGGCTGATGGAGCTGCTCAATGAGACGTCCCCGTCCTCTCAGGAGACGCATGACAGTCCCT
TCTGTCTGAGGAAGCAGAGCCACGACAGTCGGAAATCTACCAGCTTTATGTCAGTCAGCCCCAGCAAGGA
GATCAAGATCGTGTCTGCCGTGCGGAGGAGCAGCATGAGCAGCTGCGGCAGCAGTGGCTACTTCAGCAGC
AGCCCCACACTCAGCAGCAGCCCCCCTGTGCTCTGCAACCCCAAATCTGTGCTGAAGAGACCTGTCACTT
CTGAGGAACTCTTGACTCCGGGGGCTCCGTACGCAAGGAAGACATTCACGATTGTTGGTGACGCAGTTGG
CTGGGGCTTTGTGGTACGAGGAAGTAAACCATGCCACATCCAGGCTGTGGACCCCAGTGGACCTGCAGCC
GCTGCAGGGATGAAGGTCTGTCAGTTTGTCGTCTCTGTCAATGGCCTCAACGTGCTGAATGTAGACTACC
GCACCGTGAGCAATCTGATTCTGACAGGCCCAAGGACAATTGTCATGGAAGTCATGGAGGAGTTGGACTG
CTGA

Translation (397 aa):
MKQAFLVVLRHSISEDRLPPLSVITSGCRLRLHEEKVIKDRRHHLKTYPNCFVAKELIDWLIEHKEASDR
ETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFRKDDGTFALDSEVKAFMRGQRLYEKLMSPETTLLQ
PREEEGVKYERTFMASEFLDWLVQEGEATTRKEAEQLCHRLMDHGIIQHVSNKHPFVDSNLLYQFRMNFR
RRRRLMELLNETSPSSQETHDSPFCLRKQSHDSRKSTSFMSVSPSKEIKIVSAVRRSSMSSCGSSGYFSS
SPTLSSSPPVLCNPKSVLKRPVTSEELLTPGAPYARKTFTIVGDAVGWGFVVRGSKPCHIQAVDPSGPAA
AAGMKVCQFVVSVNGLNVLNVDYRTVSNLILTGPRTIVMEVMEELDC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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