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Report for CCDS27483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27483.1 Public Mus musculus 15 Zhx2 23 108 98 CCDS HistoryNCBI Gene:387609Re-query CCDS DB by CCDS ID:27483.1Re-query CCDS DB by GeneID:387609See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096430.10 ENSMUSP00000094164.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096430.10Link to Ensembl Protein Viewer:ENSMUSP00000094164.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096430Re-query CCDS DB by Protein ID:ENSMUSP00000094164
Original member Current member NCBI NM_199449.2 NP_955520.1 Accepted alive Link to Nucleotide Sequence:NM_199449.2Link to Protein Sequence:NP_955520.1Re-query CCDS DB by Nucleotide ID:NM_199449Re-query CCDS DB by Protein ID:NP_955520Link to BLAST:NP_955520.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955520.1 836 Q8C0C0 836 100% 0 0

Chromosomal Locations for CCDS 27483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57821237 57823747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2511 nt):
ATGGCAAGCAAACGGAAATCTACAACTCCCTGCATGGTTCGGACATCACAGGTACTGGAACAAGATATGC
TG
GAGGAGGCAGACAGGGCCAAAGACAAAGGAGCGGGCATGCCACAGTCCGATGTGACAAAGGACAGCTG
G
GCAGCGGAACCTGAACATTCGTCCAAAGAAACCGAAGTGGTTGAGGTGAAATCTATGGGGGAGAACCTG
TCC
AAAAAACTACAGGGCGGTTATGAGTGCAAATACTGCCCTTATTCCACGCAAAATCTGAATGAGTTCA
CA
GAACACGTGGACATGCAACATCCTAACGTGATTCTCAACCCCCTCTACGTATGTGCCGAATGTAACTT
C
ACAACCAAAAAGTACGACTCCTTGTCTGACCACAACTCCAAGTTCCATCCGGGGGAGACCAACTTCAAG
CTG
AAATTAATCAAGCGCAATAATCAGACGGTTCTAGAACAGTCCATCGAAGCCACCAACCACGTCGTGC
CC
ATCACTGCCAGTGGTCCTGGAAGTAGTGATAACGACCCTGGGGTCTCGGTAGGAAAAACCCCCATGAC
A
AAGACAGGAAAGCTGAAGGCAGATGCCAAGAAAGTGCCCAAGAAGCCTGATGAGGCTGCCCCAGAAAAC
CAC
ATGGAAGGGACCGCCCGCCTGGTGACAGACACAGCTGAGATCCTCGCCAGACTTGGTAGCGTGGAGC
TC
CTTCAAGATTCACTGGGACATGTCATGCCTTCCGTACAGCTGCCACCAAATATCAACCTTGTCCCCAA
G
GTCCCCGTCCCGCTGAATACTACCAAATACAACTCTGCCCTGGACACAAATGCTACCATGATCAACTCC
TTC
AACAAGTTCCCTTACCCCACCCAGGCTGAGCTCTCCTGGCTGACGGCGGCCTCCAAACACCCAGAGG
AG
CACATCCGAATCTGGTTTGCCACCCAGCGTTTAAAGCACGGTATCAGCTGGTCCCCAGAGGAGGTGGA
G
GAGGCCCGGAAGAAGATGTTTAACGGCACGATTCAGTCAGTACCCCCGACTATCACTGTGCTTCCTGCT
CAG
CTGACTCCCACAAAAGTGTCACAGCCCATCCTCCAGACAGCCCTACCATGCCAGATCCTTGGCCAGC
CC
AGCCTGGTGCTGACTCAAGTGACAAGCGGGTCAACAACTGTCTCCTGCTCTCCCATCACACTTGCGGT
G
GCTGGGGTGACCAATCATGGCCAGAAGAGACCTCTGGTGACTCCTCAAGCTGCCCCTGAGCCGAAGCGT
CCA
CACATTGCCCAGGTGCCAGAACCTCCACCCAAGGTGGCCAATACCCCGCTCACCCCAGCTAGCGACC
GC
AAGAAGACCAAGCTACAGATAGCTCACCTCAAGGCAAGCTTCTTACAGAGCCAGTTCCCTGACGATGC
T
GAGGTCTACCGGCTCATTGAGGTGACAGGCCTTGCGAGGAGTGAGATCAAGAAGTGGTTCAGTGACCAC
CGC
TACCGGTGTCAGAGGGGCATCGTCCACATCACCAGCGAATCCCTTGCCAAAGACCAGATGGCCATTA
CT
GGCACCCGGCACGGCCGCACCTACCATGTATACCCAGACTTTGCCCCGCAGAAGTTCAAAGAGAAAAG
C
CAAGGACAGTTGAAAACCCTGGAAGACAGCTTTCTAAAAAGCTCCTTTCCCACCCAGGCAGAAGTGGAA
CGG
CTGAGGGTGGAGACCAAGCTGAGCAGGAGGGAAATCGACTCCTGGTTCTCAGAGAGGCGGAAGCTTC
GA
GACAGCATGGAGCAGGCTGTGTTGGATTCCATGGGGTCTGGCAAAAAGGGCTCAGACGCGGTAGCCCC
C
AATGGTGCTCTATCCCGACTTGATCAGCTCTCTGGTGCCCAGTTAGCTGGTTCTTTGCCCAGTCCTTCA
TCA
GCAATTGTACAAAATCAAGAACAGGTTCACCTGCTCAGGAGCACTTTTGCAAGAACCCAGTGGCCCA
CT
CCTCAGGAGTACGATCAGTTAGCTGCCAAGACCGGCCTGGTCCGAACTGAGATTGTGCGCTGGTTCAA
G
GAGAACAGATGCTTACTAAAAACTGGAACGTTGAGCTGGCTGGAGCAGTACCAGCGGCATCACATGTCA
GAT
GACCGTGGTCGTGATGCCGTATCAAGAAAGGTGGCAAAACAAGTTGCTGAGAGCCCAAAGAATGGAA
GC
GAGGCGGCACATCAGTATGCCAAGGACCCCAAAGCACTCAGCGAGGAGGACTCCGAGAAGCTGGTCCC
G
AGGATGAAAGTGGGTGGTGATCCAACCAAGGACTGTTTGGCAGGCAAGCCCTCAGAGGCCACCTCAGAC
AGA
TCAGAGGGCAGCCGAGATGGCCAGGGCAGTGAGGAGAACGAGGAGTCAGGCATCGTGGACTTTGTGG
AG
GTGACAGTTGGTGAGGAGGACGCCATCTCAGAGAAGTGGGGTAGCTGGAGCCGGAGAGTAGCAGAAGG
C
ACAGTGGAGAGGGCAGACTCCGACTCCGACAGCACCCCTGCAGAGGCCGGCCAAGCCTAG


Translation (836 aa):
MASKRKSTTPCMVRTSQVLEQDMLEEADRAKDKGAGMPQSDVTKDSWAAEPEHSSKETEVVEVKSMGENL
S
KKLQGGYECKYCPYSTQNLNEFTEHVDMQHPNVILNPLYVCAECNFTTKKYDSLSDHNSKFHPGETNFK
L
KLIKRNNQTVLEQSIEATNHVVPITASGPGSSDNDPGVSVGKTPMTKTGKLKADAKKVPKKPDEAAPEN
H
MEGTARLVTDTAEILARLGSVELLQDSLGHVMPSVQLPPNINLVPKVPVPLNTTKYNSALDTNATMINS
F
NKFPYPTQAELSWLTAASKHPEEHIRIWFATQRLKHGISWSPEEVEEARKKMFNGTIQSVPPTITVLPA
Q
LTPTKVSQPILQTALPCQILGQPSLVLTQVTSGSTTVSCSPITLAVAGVTNHGQKRPLVTPQAAPEPKR
P
HIAQVPEPPPKVANTPLTPASDRKKTKLQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDH
R
YRCQRGIVHITSESLAKDQMAITGTRHGRTYHVYPDFAPQKFKEKSQGQLKTLEDSFLKSSFPTQAEVE
R
LRVETKLSRREIDSWFSERRKLRDSMEQAVLDSMGSGKKGSDAVAPNGALSRLDQLSGAQLAGSLPSPS
S
AIVQNQEQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVRWFKENRCLLKTGTLSWLEQYQRHHMS
D
DRGRDAVSRKVAKQVAESPKNGSEAAHQYAKDPKALSEEDSEKLVPRMKVGGDPTKDCLAGKPSEATSD
R
SEGSRDGQGSEENEESGIVDFVEVTVGEEDAISEKWGSWSRRVAEGTVERADSDSDSTPAEAGQA




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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