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Report for CCDS27488.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
27488.1 |
Public |
Mus musculus |
15 |
Zhx1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:22770](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:27488.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:22770](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 27488.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000070143.12 |
ENSMUSP00000066201.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000070143.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000066201.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000070143](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000066201](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000110168.7 |
ENSMUSP00000105797.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000110168.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000105797.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000110168](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000105797](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000175805.8 |
ENSMUSP00000134844.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000175805.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000134844.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000175805](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000134844](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001042438.2 |
NP_001035903.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001042438.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001035903.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001042438](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001035903](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001035903.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_009572.4 |
NP_033598.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_009572.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_033598.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_009572](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_033598](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_033598.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 27488.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2622 nt): ATGGCAAGCAGACGAAAATCAACAACACCTTGCATGGTCCTTGCCAGTGAGCAGGATCCAGATCTTGAGC TGATATCGGATTTGGATGAAGGCCCTCCCATCCTTACACCTGTAGAGAATGCTAAAGCAGAGAGTGTCTC CAGCGATGAAGAAGTTCACGGATCTGTGGATTCTGACAATCAGCAAAATAAGAAAGTGGAAGGGGGCTAT GAATGTAAATATTGTACTTTTCAAACTCCAGATCTAAATATGTTTACTTTCCATGTAGATTCAGAACATC CCAATGTTGTGCTGAATTCCTCCTATGTTTGTGTTGAATGCAATTTTCTTACCAAAAGGTATGATGCACT TTCTGAGCATAATCTGAAATACCACCCAGGAGAAGAAAATTTCAAGCTGACTATGGTGAAGCGGAATAAC CAGACAATCTTTGAACAGACAATAAATGATCTAACTTTTGATGGCAGTTTTGTTAAAGAGGAGAATACAG AACAAGGAGAATCCATAGATGTTTCTTCTTCGGGAATCTCCATTAGTAAAACTCCCATCATGAAAATGAT GAAAAATAAGGTAGAGAACAAACGGATTACAGTCCACCATAACTCAGCTGAGGGCACTTCTGAAGAGAAA GAGAATGGAGTAAAAGCAAGCCAGGAAGAAAATGCAGAAAGTGTGAGTTCTTCAGCTTTAGAATCCAATA CAAGTACTTCCACCATCAACAGAGTGCATCCCAGTCCTGCCAGCACAGTGGTGACTCCCACAGCTGTTCT TCCTGGGTTAGCACAGGTGATAACTGCGGTGTCTGCTCAACAGAACTCAAACTTGCTCCCTAAAGTCTTA ATCCCCGTTAATAGCATTCCTACCTACAATGCTGCATTGGATAACAATCCTCTTCTACTTAATACCTACA ACAAATTCCCTTATCCTACAATGTCAGAAATTACAGTTCTTTCTGCTCAAGCAAAATATACAGAGGAACA AATCAAGATCTGGTTTTCAGCCCAACGTTTAAAGCATGGTGTTAGTTGGACTCCTGAAGAAGTAGAGGAG GCGAGAAGAAAACAATTCAATGGAACAGTACATACTGTACCTCAGACCATAACTGTTATTCCTACACACA TTTCCACAGGGAGTAACGGGTTACCATCTATCTTACAGACATGCCAAATTGTTGGTCAGCCAGGTCTGGT CCTTACTCAAGTAGCTGGAACAAACACCTTGCCAGTAACAGCACCCATTGCCCTGACAGTGGCAGGGGTT CCAAATCAAACAAATGTACAAAAGAGCCAAGTGCCTGCTGCTCAGCCTGCTACAGACACAAAACCAGCCA CAGCAGCAGTTCCATCCTCGCCAAGTGTCAGACCTGAAGCTGCACTAGTGAACCCAGATTCATTTGGTAT TCGGGCCAAAAAGACTAAAGAGCAGCTGGCAGAACTGAAAGTTAGCTACCTAAAAAATCAGTTTCCCCAT GACTCAGAGATCATCAGGCTTATGAAAATAACAGGCCTTACCAAAGGCGAGATTAAAAAATGGTTTAGTG ATACAAGGTACAACCAGAGAAATTCAAAGAGTAACCAGTGCTTACATCTCAACAATGACTCCTCTGCCAC TATCATCATAGACTCCAGTGATGAAACCCCAGAACCCCCAGCGGCAGCTGCTTCACAGCAGAAACAGTCC TGGAATCCCTTTCCTGACTTTGCTCCCCAGAAGTTTAAAGAGAAAACTGCAGAGCAACTCCGTGCCCTTC AGGCAAGTTTTCTCAACAGTTCTGTACTTACTGATGAAGAAGTAAATAGGTTAAGAGCGCAAACCAAACT TACTAGAAGAGAAATTGATGCTTGGTTTACAGAGAAAAATAAAACAAAAGCTTTAAAGGATGAGAAAATA GAAGTAGATGAAAGTAATGTAGGTAGTTCCAAAGAAGAGCCTGGAGAAAGTTCTCCTGGAGATGAAACAG TTGCACCTAAGTCAGGAGGGACAGGCAAGATATGTAAGAAAACACCAGAGCAGCTGCACATGCTTAAAAG TGCATTTGTCCGAACACAGTGGCCATCAGCAGAAGAGTATGACAAGCTGGCTGAAGAGAGTGGCCTTGCC AGAACAGATATAGTTAGTTGGTTTGGGGATACCCGTTATGCTTGGAAGAATGGAAACTTGAAATGGTATT ACTACTATCAAAGCTCCAATTCAAGTAGTTTGAATGGTCTATCTTCCCTTAGGAGAAGAGGGAGAGGCAG ACCCAAAGGAAGGGGCAGGGGCAGACCACGTGGTCGGCCCAGAGGTGGAAAAAGAATGAACACCTGGGAC AGGGTACCATCGCTTATAAAGTTTAAAACTGGAACAGCAATACTTAAGGATTATTACCTGAAGCACAAAT TTCTTAATGAGCAAGACCTTGATGAACTTGTCAACAGATCACACATGGGTTATGAGCAGGTCAGAGAGTG GTTTGCAGAAAGACAGAGAAGATCTGAGTTAGGTATAGAATTATTTGAGGAAAATGAGGAGGAAGATGAA GTTGTTGATGATCAGGAAGAAGATGAAGAAGAAACAGATGATAGTGACACTTGGGAACCCCCACGACATG TGAAGCGGAAGCTTTCTAAATCGGATGACTGA
Translation (873 aa): MASRRKSTTPCMVLASEQDPDLELISDLDEGPPILTPVENAKAESVSSDEEVHGSVDSDNQQNKKVEGGY ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRNN QTIFEQTINDLTFDGSFVKEENTEQGESIDVSSSGISISKTPIMKMMKNKVENKRITVHHNSAEGTSEEK ENGVKASQEENAESVSSSALESNTSTSTINRVHPSPASTVVTPTAVLPGLAQVITAVSAQQNSNLLPKVL IPVNSIPTYNAALDNNPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEE ARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGV PNQTNVQKSQVPAAQPATDTKPATAAVPSSPSVRPEAALVNPDSFGIRAKKTKEQLAELKVSYLKNQFPH DSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSATIIIDSSDETPEPPAAAASQQKQS WNPFPDFAPQKFKEKTAEQLRALQASFLNSSVLTDEEVNRLRAQTKLTRREIDAWFTEKNKTKALKDEKI EVDESNVGSSKEEPGESSPGDETVAPKSGGTGKICKKTPEQLHMLKSAFVRTQWPSAEEYDKLAEESGLA RTDIVSWFGDTRYAWKNGNLKWYYYYQSSNSSSLNGLSSLRRRGRGRPKGRGRGRPRGRPRGGKRMNTWD RVPSLIKFKTGTAILKDYYLKHKFLNEQDLDELVNRSHMGYEQVREWFAERQRRSELGIELFEENEEEDE VVDDQEEDEEETDDSDTWEPPRHVKRKLSKSDD
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