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Report for CCDS27554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27554.1 Public Mus musculus 15 Eef1d 23 108 98 CCDS HistoryNCBI Gene:66656Re-query CCDS DB by CCDS ID:27554.1Re-query CCDS DB by GeneID:66656See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154584.8 ENSMUSP00000116360.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154584.8Link to Ensembl Protein Viewer:ENSMUSP00000116360.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154584Re-query CCDS DB by Protein ID:ENSMUSP00000116360
Original member NCBI NM_001285429.1 NP_001272358.1 Updated not alive Link to Nucleotide Sequence:NM_001285429.1Link to Protein Sequence:NP_001272358.1Re-query CCDS DB by Nucleotide ID:NM_001285429Re-query CCDS DB by Protein ID:NP_001272358
Current member NCBI NM_001285429.2 NP_001272358.1 Accepted alive Link to Nucleotide Sequence:NM_001285429.2Link to Protein Sequence:NP_001272358.1Re-query CCDS DB by Nucleotide ID:NM_001285429Re-query CCDS DB by Protein ID:NP_001272358Link to BLAST:NP_001272358.1
Original member NCBI NM_001285430.1 NP_001272359.1 Updated not alive Link to Nucleotide Sequence:NM_001285430.1Link to Protein Sequence:NP_001272359.1Re-query CCDS DB by Nucleotide ID:NM_001285430Re-query CCDS DB by Protein ID:NP_001272359
Current member NCBI NM_001285430.2 NP_001272359.1 Accepted alive Link to Nucleotide Sequence:NM_001285430.2Link to Protein Sequence:NP_001272359.1Re-query CCDS DB by Nucleotide ID:NM_001285430Re-query CCDS DB by Protein ID:NP_001272359Link to BLAST:NP_001272359.1
Original member NCBI NM_023240.3 NP_075729.2 Updated not alive Link to Nucleotide Sequence:NM_023240.3Link to Protein Sequence:NP_075729.2Re-query CCDS DB by Nucleotide ID:NM_023240Re-query CCDS DB by Protein ID:NP_075729
Current member NCBI NM_023240.4 NP_075729.2 Accepted alive Link to Nucleotide Sequence:NM_023240.4Link to Protein Sequence:NP_075729.2Re-query CCDS DB by Nucleotide ID:NM_023240Re-query CCDS DB by Protein ID:NP_075729Link to BLAST:NP_075729.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272358.1 281 P57776-1 281 99.6441% 0 1
NP_001272359.1 281 P57776-1 281 99.6441% 0 1
NP_075729.2 281 P57776-1 281 99.6441% 0 1

Chromosomal Locations for CCDS 27554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75895553 75895591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75895732 75895926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75896243 75896464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75896640 75896740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75896820 75896919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75900691 75900762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75901132 75901248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGCTACAAACTTTCTAGCGCATGAGAAGATCTGGTTTGACAAGTTTAAATATGATGATGCAGAAAGGA
GATTCTATGAGCAGATGAACGGGCCTGTGACCTCCGGCTCCCGCCAGGAGAATGGTGCCAGCGTGATCCT
CCGAGACATTGCAAGAGCCAGAGAGAACATCCAGAAATCCTTGGCTGGAAGCTCAGGCCCTGGAGCCTCC
AGTGGACCTGGTGGAGACCACAGTGAGCTCATTGTGAGGATTACCAGTCTGGAAGTGGAGAACCAGAACC
TTCGAGGCGTGGTGCAAGATTTGCAGCAGGCCATTTCCAAGTTGGAGGCCCGGCTGAGCTCTCTAGAGAA
GAGTTCACCTACTCCCCGAGCCACGGCCCCACAGACCCAACATGTCTCTCCTATGCGTCAAGTGGAGCCC
CCAACCAAGAAAGGAGCCACACCAGCAGAGGACGATGAGGACAAGGACATTGACCTGTTCGGCAGTGACG
AGGAGGAAGAAGATAAGGAGGCTGCCCGACTACGGGAGGAGAGGCTACGCCAGTACGCAGAGAAGAAGGC
CAAGAAGCCCACACTGGTGGCCAAATCCTCCATCCTTTTGGATGTTAAACCTTGGGATGATGAGACTGAC
ATGGCCCAGCTAGAGACTTGTGTGCGTTCCATCCAATTGGACGGGCTGGTTTGGGGGGCCTCCAAGCTTG
TGCCTGTTGGCTATGGCATCCGGAAGCTGCAGATCCAGTGTGTGGTGGAGGATGACAAAGTGGGCACCGA
CTTGCTCGAGGAGGAGATCACCAAATTTGAGGAGCATGTGCAGAGTGTCGACATCGCAGCTTTCAACAAG
ATCTGA

Translation (281 aa):
MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVTSGSRQENGASVILRDIARARENIQKSLAGSSGPGAS
SGPGGDHSELIVRITSLEVENQNLRGVVQDLQQAISKLEARLSSLEKSSPTPRATAPQTQHVSPMRQVEP
PTKKGATPAEDDEDKDIDLFGSDEEEEDKEAARLREERLRQYAEKKAKKPTLVAKSSILLDVKPWDDETD
MAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK
I


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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