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Report for CCDS27855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27855.1 Public Mus musculus 15 Krt90 23 108 98 CCDS HistoryNCBI Gene:239673Re-query CCDS DB by CCDS ID:27855.1Re-query CCDS DB by GeneID:239673See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023714.4 ENSMUSP00000023714.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023714.4Link to Ensembl Protein Viewer:ENSMUSP00000023714.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023714Re-query CCDS DB by Protein ID:ENSMUSP00000023714
Original member Current member NCBI NM_177717.4 NP_808385.2 Accepted alive Link to Nucleotide Sequence:NM_177717.4Link to Protein Sequence:NP_808385.2Re-query CCDS DB by Nucleotide ID:NM_177717Re-query CCDS DB by Protein ID:NP_808385Link to BLAST:NP_808385.2

Chromosomal Locations for CCDS 27855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101553148 101553371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101554672 101554706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101555260 101555480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101556234 101556359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101557174 101557338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101558301 101558396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101559192 101559252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101560417 101560625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101562346 101562825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGACCCAGCGATCCTCGGTGACCATCAAGTCTGGGGGCACGCGGAACTTCAGTGCCTCCTCGGCTAGCC
TCCTTCCTGGATGTCGGCCGGGTTTCAGCTCTGTCTCTGTGTCCCAGAGCGGGAAGAGTTTCGGAGGTGG
CATAGGGGGTGGTTTTGGGACAAGAAGCCTACACAGCTTTGGGGGTAACAAGAGGATCTCCATCGGTGGG
GGCTACCGCTCCACCCGAGCCAGCTTTGGGGGCGCTGCCTGTGGTCTGGGTGTCAGCGGCATAGGATACA
GAGTTGGGGGAGCCTATGGAGGGTATGGATATGGAGGTGGAATGGCCCCTGGAGCTGGAGGCATCCATGA
AGTCACTGTCAACCAGAGTCTCCTGACACCCCTCCACCTGGAGATTGATCCATCTCTCCAGCGGGTTCGA
AAGGAGGAGAAGGAGCAGATCAAGACCCTCAACAACAAGTTCGCCTCCTTCATAGATAAGGTGCGGTTCT
TGGAGCAGCAGAACAAAGTCTTAGAGACCAAATGGAGCCTCCTCCAAGAGCACAAAACAACCAGGACCAA
TCTAGAGCCCATGTTCGAAGCCTACATCACCAACCTGAGGCGCCAGCTGGAGTGCCTGGGAGGGGAGCGG
AGCAGGCTGGAGACGGAGCTGAAGAGCATGCAGGACGTGGTGGAGGACTTCAAGAACAAGTACGAAGAGG
AAATCCACAGACGTACAGCGGCAGAGAATGAGTTTGTGGTACTCAAAAAAGATGTGGACGCTGCCTACAT
GAACAAGGTGGAGCTAGAGGCCAAGGTGGAAGCTCTGATGGATGAGATCAACTTCCTGAGAGCTTTCTTT
GAAGCGGAGCTGGCTCAACTTCAGGCTCAAATCTCTGAGACCTCTGTGGTCCTGTCCATGGACAACAACC
GCAGCCTGAACCTGGACAGCATCATTGCTGAGGTCAAGGCCCAATACGAGGACATTGCCAATCGCAGCCG
GGCAGAGGCTGAATCCTGGTACCAGACCAAGTATGAGGAGCTGCAGAGGTCTGCTGGCCAACGCGGGGAT
GACCTCCGTACTACTAAGATGGAGATCTCTGAGCTGAACCGGGCCATGCAGAGGCTGCGTTCTGAGATTG
ACAATCTGAAGAAGCAGTGTGCCACACTCCAGGCTTCCATTGCCGATGCCGAGCAACGCGGGGAGCTGGC
TCTCAAAGATGCCAAGAACAAGCTGGCCGAGCTGGAGGATGCCCTGCAGAAGGCCAAGCAGGACATGGCC
CGTCAACTGCGAGAGTACCAGGAGCTCATGAACGTCAAGCTGGCCCTGGACATAGAGATCGCCACCTACC
GAAAGCTGCTGGAGGGCGAGGAGTGCAGGCTCACTGGAGAAGGTGTTGGTGCCGTGAACATCTCTGTGGT
CTCTTCCTCCGGGGGCACAGGCTACAGTGGAGGTGGTGGCCTGTGTGTGAGTGGCGGAGGCTACAGCGGA
GGCGGCTACAGTGGGAGTGGCCTCTGCTACGGGGGCGGAGGCAGCGGAGGTTTTAGCTCCACCAGCGGTC
GCAGCGTGAGCGGCAGCAGTTCAAGCATGAGAATTGTCTCCAAGACATCATCCACCAAGAAGAGTTACCG
GAGCTAA

Translation (538 aa):
MTQRSSVTIKSGGTRNFSASSASLLPGCRPGFSSVSVSQSGKSFGGGIGGGFGTRSLHSFGGNKRISIGG
GYRSTRASFGGAACGLGVSGIGYRVGGAYGGYGYGGGMAPGAGGIHEVTVNQSLLTPLHLEIDPSLQRVR
KEEKEQIKTLNNKFASFIDKVRFLEQQNKVLETKWSLLQEHKTTRTNLEPMFEAYITNLRRQLECLGGER
SRLETELKSMQDVVEDFKNKYEEEIHRRTAAENEFVVLKKDVDAAYMNKVELEAKVEALMDEINFLRAFF
EAELAQLQAQISETSVVLSMDNNRSLNLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQRSAGQRGD
DLRTTKMEISELNRAMQRLRSEIDNLKKQCATLQASIADAEQRGELALKDAKNKLAELEDALQKAKQDMA
RQLREYQELMNVKLALDIEIATYRKLLEGEECRLTGEGVGAVNISVVSSSGGTGYSGGGGLCVSGGGYSG
GGYSGSGLCYGGGGSGGFSSTSGRSVSGSSSSMRIVSKTSSTKKSYRS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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