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Report for CCDS27912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27912.1 Public Mus musculus 16 Cluap1 23 108 98 CCDS HistoryNCBI Gene:76779Re-query CCDS DB by CCDS ID:27912.1Re-query CCDS DB by GeneID:76779See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040881.13 ENSMUSP00000043397.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040881.13Link to Ensembl Protein Viewer:ENSMUSP00000043397.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040881Re-query CCDS DB by Protein ID:ENSMUSP00000043397
Original member NCBI NM_029738.2 NP_084014.1 Updated not alive Link to Nucleotide Sequence:NM_029738.2Link to Protein Sequence:NP_084014.1Re-query CCDS DB by Nucleotide ID:NM_029738Re-query CCDS DB by Protein ID:NP_084014
Current member NCBI NM_029738.3 NP_084014.1 Accepted alive Link to Nucleotide Sequence:NM_029738.3Link to Protein Sequence:NP_084014.1Re-query CCDS DB by Nucleotide ID:NM_029738Re-query CCDS DB by Protein ID:NP_084014Link to BLAST:NP_084014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084014.1 413 Q8R3P7 413 100% 0 0

Chromosomal Locations for CCDS 27912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3909132 3909153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3911451 3911562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3913285 3913369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3915423 3915602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3917826 3917921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3919481 3919564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3923840 3923973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3928490 3928631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3929840 3929912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3933707 3933814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3937559 3937614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3940768 3940917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGTCTTTCCGCGACCTCCGCAATTTCACCGAGATGATGAGAGCCTTGGGGTACCCACGCCATATTTCTA
TGGAGAATTTCCGCACACCCAACTTTGGGCTTGTCTCTGAAGTGCTTCTGTGGCTTGTGAAAAGGTATGA
GCCGCAGACTGACATCCCTTCTGACATTGAGACTGAACAAGACAGAGTTTTCTTCATTAAGGCAATTGCC
CAGTTCATGGCCACAAAGGCACATATAAAACTCAATACCAAGAAGCTCTATCAAGCTGACGGGTATGCAG
TGAAAGAGCTGCTGAAGATCACATCTGTTCTCTATAATGCAATGAAGACCAAAGGGATGGAGGGCTCCAA
TGTAGGAGAGGAAGACATCAGCAAATTCAAGTTTGATCTCGGCTCCAAGATTGCAGATTTGAAAGCAGCC
AGACAGCTTGCGTCTGAAATCACTGCCAAAGGAGCCTCTCTGTATGACTTGCTGGGCAAAGAGGTTGAGC
TGAGGGAACTGAGGACAGAAGCCATTGCTAGACCTCTAGAGATCAATGAGACTGAAAAGGTGATGAGGAT
TGCAATCAAAGATCTTTTGGCCCAGGTTCAGAAGACTAAAGACCTGCTTAATAATGTGGCCTCTGATGAA
GCAAACTTAGAAGCCAAAATTGAAAAGAGAAAATTAGAACTGGAAAGAAATCGGAAGCGACTGCAGACCC
TGCAGAGTGTCAGGCCGGCCTTTATGGATGAATATGAGAAGGTTGAGGAAGACCTGCAGAAGCAGTATGA
CGTCTATCTAGAGAAGTTCCGGAACCTGGCTTACCTGGAGCAGCAGCTTGAGGATCACCACAGGATGGAG
CAGGAGAGGTTTGAAGAAGCTGAAAATACTCTCCGTCTGATGCAAAATAAGTTAAAGGAAGAAGAGAAGC
GACTGCTCAAGAGTGGAAGCAATGATGACTCAGACATAGACATCCAAGAGGATGATGAATCAGACAGCGA
GTTGGAGGACAGACGGATGTCTAAGCCTCGGACAGCGATGGAGGTGCTCATGCAAGGAAGGCCCAGCAAA
CGGATCGTGGGTGCAATGCAAGGTGGAGACTCGGATGAAGACGAAGACTCGGAGGACAGTGAAATTGACA
TGGAAGATGATGAAGAAGATGATGACGATTTGGAAGATGAAAGCATTGCTCTCTCACCAGCTAAGCCCAG
TCGAAGGATCCGTAAACCGGAGCCCTTGGATGAAAGTGACAATGACTTCTGA

Translation (413 aa):
MSFRDLRNFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVKRYEPQTDIPSDIETEQDRVFFIKAIA
QFMATKAHIKLNTKKLYQADGYAVKELLKITSVLYNAMKTKGMEGSNVGEEDISKFKFDLGSKIADLKAA
RQLASEITAKGASLYDLLGKEVELRELRTEAIARPLEINETEKVMRIAIKDLLAQVQKTKDLLNNVASDE
ANLEAKIEKRKLELERNRKRLQTLQSVRPAFMDEYEKVEEDLQKQYDVYLEKFRNLAYLEQQLEDHHRME
QERFEEAENTLRLMQNKLKEEEKRLLKSGSNDDSDIDIQEDDESDSELEDRRMSKPRTAMEVLMQGRPSK
RIVGAMQGGDSDEDEDSEDSEIDMEDDEEDDDDLEDESIALSPAKPSRRIRKPEPLDESDNDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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