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Report for CCDS28057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28057.1 Public Mus musculus 16 Clcn2 23 108 98 CCDS HistoryNCBI Gene:12724Re-query CCDS DB by CCDS ID:28057.1Re-query CCDS DB by GeneID:12724See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007207.14 ENSMUSP00000007207.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007207.14Link to Ensembl Protein Viewer:ENSMUSP00000007207.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007207Re-query CCDS DB by Protein ID:ENSMUSP00000007207
Original member NCBI NM_009900.2 NP_034030.2 Updated not alive Link to Nucleotide Sequence:NM_009900.2Link to Protein Sequence:NP_034030.2Re-query CCDS DB by Nucleotide ID:NM_009900Re-query CCDS DB by Protein ID:NP_034030
Current member NCBI NM_009900.3 NP_034030.2 Accepted alive Link to Nucleotide Sequence:NM_009900.3Link to Protein Sequence:NP_034030.2Re-query CCDS DB by Nucleotide ID:NM_009900Re-query CCDS DB by Protein ID:NP_034030Link to BLAST:NP_034030.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034030.2 908 Q9R0A1 908 100% 0 0

Chromosomal Locations for CCDS 28057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20703243 20703437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20703555 20703641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20707174 20707278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20707419 20707457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20707573 20707632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20707843 20707916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20708077 20708191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20708294 20708466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20708634 20708767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20709102 20709315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20709570 20709680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20709880 20709949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20710272 20710427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20710555 20710639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20711690 20711791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20711892 20711976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20712057 20712182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20712312 20712390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20712472 20712549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20712654 20712787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20712880 20713008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20713328 20713459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20713613 20713769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20715909 20715995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGGCGGCTGCAACGGCTGCGGCGGCCGCGGCGGCGGCGGCGGGGGAAGGGATGGAGCCTCGAGCGCTGC
AGTACGAGCAGACCCTGATGTATGGCCGGTACACTCAGGAACTCGGGGCCTTTGCCAAAGAGGAAGCTGC
TCGTATTCGCCTGGGAGGGCCTGAGCCCTGGAAGGGGTCCCCTTCTGCCCGGGCTACCCCAGAGCTCCTA
GAATATGGACAGAGCCGATGTGCCAGATGTCGCATTTGTTCTGTACGCTGCCACAAGTTCCTGGTGTCCA
GGGTCGGTGAAGACTGGATCTTCCTGGTTCTGTTGGGGCTCCTCATGGCACTGGTCAGCTGGGCTATGGA
CTATGCCATCGCTGTCTGTCTACAGGCTCAGCAATGGATGTCCCGGGGCTTAAACACCAACATCTTACTC
CAGTACCTGGCTTGGGTTACCTACCCCGTGGTCCTCATCACTTTCTCTGCTGGATTCACCCAGATCCTGG
CCCCACAGGCTGTCGGGTCTGGCATCCCCGAAATGAAAACCATCCTTCGGGGAGTGGTGCTGAAAGAATA
CCTCACCCTCAAGACCTTTGTAGCTAAGGTCATTGGGCTAACCTGTGCCCTGGGCAGTGGGATGCCCCTT
GGCAAAGAGGGACCCTTTGTGCACATTGCCAGCATGTGTGCCGCCCTTCTCAGCAAGTTCCTCTCCCTCT
TTGGGGGTATCTATGAGCATGAGTCCCGGAACACGGAGATGCTAGCTGCTGCATGCGCAGTAGGAGTGGG
CTGCTGCTTTGCCGCACCAATCGGAGGGGTCCTATTCAGCATTGAAGTCACCTCCACCTTCTTCGCTGTT
AGGAACTACTGGCGGGGCTTCTTTGCGGCCACCTTCAGTGCCTTCATCTTTCGGGTCTTGGCAGTGTGGA
ACCGTGATGAAGAAACCATCACAGCTCTCTTCAAAACTCGGTTCCGACTCGACTTCCCATTTGACCTGCA
AGAGCTGCCAGCCTTTGCTGTCATTGGCATTGCTAGTGGCTTCGGGGGAGCCCTCTTTGTCTACCTGAAC
CGGAAGATTGTCCAGGTGATGCGGAAGCAAAAAACCATCAACCGCTTCCTCATGAGGAAACGGCTGCTCT
TCCCGGCACTGGTGACTCTGCTCATCTCCACTCTGACCTTCCCCCCTGGCTTTGGACAGTTCATGGCCGG
ACAGCTCTCACAGAAGGAGACCCTAGTCACTCTGTTTGACAACCGGACGTGGGTCCGCCAGGGCCTGGTT
GAGGATCTAGAGCTACCCAGCACTTCACAGGCCTGGAGCCCACCACGTGCCAATGTCTTCCTTACTCTGG
TCATCTTCATCCTCATGAAGTTCTGGATGTCTGCACTGGCTACCACTATCCCAGTGCCCTGTGGGGCCTT
CATGCCTGTCTTTGTCATTGGAGCGGCATTTGGGCGGCTGGTGGGCGAAAGCATGGCCGCCTGGTTCCCA
GATGGGATTCACACAGATAGCAGCACCTACCGAATTGTACCTGGAGGCTATGCTGTGGTCGGGGCGGCTG
CACTCGCAGGAGCAGTGACACACACAGTGTCCACAGCAGTGATTGTCTTCGAGCTCACGGGCCAGATCGC
TCACATTCTGCCTGTCATGATTGCTGTCATCCTGGCTAATGCTGTTGCCCAGAGCCTGCAGCCATCGCTC
TATGACAGTATCATCCGCATCAAGAAGCTGCCCTACCTACCTGAGCTGGGCTGGGGCCGCCACCAGCAGT
ACCGGGTGCGAGTCGAGGACATCATGGTTCGGGATGTACCCCATGTAGCCCTCAGCTGCACTTTTCGGGA
CCTGCGGTTGGCACTGCACAGAACCAAGGGCCGTATGTTGGCCCTAGTGGAGTCTCCTGAGTCCATGATC
CTACTGGGATCCATCGAACGCTCACAGGTGGTAGCACTACTAGGAGCCCAGCTGAGCCCAGCGCGCAGGC
GGCAGCACATGCAAAAGCTAAGAAAAGCCCAGCTGTCTCCACCGTCGGATCAGGAGAGCCCCCCTAGCTC
CGAGACATCTATCCGCTTCCAGGTGAACACAGAGGACTCGGGCTTCTCTGGAGCCCACGGGCAGACTCAC
AAGCCCCTGAAGCCTGCTCTAAAGAGAGGGCCCAGCAACAGTACAAGCCTGCAGGAAGGTACCACAGGCA
ACATGGAGTCAGCAGGCATTGCCCTCAGAAGCCTCTTCTGTGGCAGTCCACCTCTGGAGGCAACATCAGA
ATTGGAAAAGTCAGAATCCTGTGACAAGCGCAAGCTGAAGCGGGTCCGAATCTCCCTGGCGAGTGACTCA
GACCCGGAAGCCGAGATGAGTCCTGAGGAGATCTTAGAGTGGGAAGAACAGCAGCTAGATGAGCCAGTCA
ACTTCAGTGACTGCAAAATCGACCCTGCCCCCTTCCAGCTGGTGGAGCGGACTTCTTTGCACAAGACCCA
CACCATCTTCTCATTGCTGGGAGTGGACCATGCTTATGTCACCAGCATTGGCAGACTCATTGGGATTGTC
ACCCTAAAGGAGCTCCGGAAGGCCATTGAAGGCTCTGTCACAGCACAGGGTGTTAAAGTCAGGCCACCCC
TCGCCAGTTTCCGGGACAGTGCCACCAGCAGCAGTGACACAGAGACCACTGAGGTGCATGCGCTCTGGGG
GCCAAGATCCCGCCACGGCCTCCCACGAGAGGGTACCCCCTCCGACAGTGATGACAAGTGCCAGTGA

Translation (908 aa):
MAAATAAAAAAAAAGEGMEPRALQYEQTLMYGRYTQELGAFAKEEAARIRLGGPEPWKGSPSARATPELL
EYGQSRCARCRICSVRCHKFLVSRVGEDWIFLVLLGLLMALVSWAMDYAIAVCLQAQQWMSRGLNTNILL
QYLAWVTYPVVLITFSAGFTQILAPQAVGSGIPEMKTILRGVVLKEYLTLKTFVAKVIGLTCALGSGMPL
GKEGPFVHIASMCAALLSKFLSLFGGIYEHESRNTEMLAAACAVGVGCCFAAPIGGVLFSIEVTSTFFAV
RNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFDLQELPAFAVIGIASGFGGALFVYLN
RKIVQVMRKQKTINRFLMRKRLLFPALVTLLISTLTFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGLV
EDLELPSTSQAWSPPRANVFLTLVIFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFP
DGIHTDSSTYRIVPGGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSL
YDSIIRIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKGRMLALVESPESMI
LLGSIERSQVVALLGAQLSPARRRQHMQKLRKAQLSPPSDQESPPSSETSIRFQVNTEDSGFSGAHGQTH
KPLKPALKRGPSNSTSLQEGTTGNMESAGIALRSLFCGSPPLEATSELEKSESCDKRKLKRVRISLASDS
DPEAEMSPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGRLIGIV
TLKELRKAIEGSVTAQGVKVRPPLASFRDSATSSSDTETTEVHALWGPRSRHGLPREGTPSDSDDKCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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