NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28123.1 Public Mus musculus 16 Tfrc 23 108 98 CCDS HistoryNCBI Gene:22042Re-query CCDS DB by CCDS ID:28123.1Re-query CCDS DB by GeneID:22042See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023486.14 ENSMUSP00000023486.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023486.14Link to Ensembl Protein Viewer:ENSMUSP00000023486.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023486Re-query CCDS DB by Protein ID:ENSMUSP00000023486
Original member Current member NCBI NM_001357298.1 NP_001344227.1 Accepted alive Link to Nucleotide Sequence:NM_001357298.1Link to Protein Sequence:NP_001344227.1Re-query CCDS DB by Nucleotide ID:NM_001357298Re-query CCDS DB by Protein ID:NP_001344227Link to BLAST:NP_001344227.1
Original member Current member NCBI NM_011638.4 NP_035768.1 Accepted alive Link to Nucleotide Sequence:NM_011638.4Link to Protein Sequence:NP_035768.1Re-query CCDS DB by Nucleotide ID:NM_011638Re-query CCDS DB by Protein ID:NP_035768Link to BLAST:NP_035768.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344227.1 763 Q62351 763 100% 0 0
NP_035768.1 763 Q62351 763 100% 0 0

Chromosomal Locations for CCDS 28123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32613191 32613226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32614566 32614767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32615193 32615394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32616749 32616898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32617097 32617199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32618218 32618331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32618633 32618731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32619037 32619176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32620366 32620523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32621175 32621297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32623057 32623142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32623372 32623435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32624369 32624436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32624768 32624826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32624984 32625065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32626549 32626770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32628476 32628616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32630094 32630336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2292 nt):
ATGATGGATCAAGCCAGATCAGCATTCTCTAACTTGTTTGGTGGGGAACCATTGTCATACACCCGGTTTA
GCCTTGCTCGGCAAGTAGATGGAGATAACAGTCATGTGGAGATGAAACTGGCTGCAGATGAAGAAGAAAA
TGCCGACAATAACATGAAGGCTAGTGTCAGAAAACCCAAGAGGTTTAATGGAAGACTCTGCTTTGCAGCT
ATTGCACTAGTCATTTTCTTCTTGATTGGATTCATGAGTGGCTACCTGGGCTATTGTAAGCGTGTAGAAC
AAAAAGAGGAGTGTGTGAAACTGGCTGAAACGGAGGAGACAGACAAGTCAGAAACCATGGAAACAGAGGA
TGTTCCTACATCATCTCGCTTATATTGGGCAGACCTCAAAACACTGTTGTCAGAGAAGTTGAACTCCATA
GAGTTTGCTGACACCATCAAGCAGCTGAGCCAGAATACATACACTCCTCGTGAGGCTGGATCTCAAAAAG
ATGAAAGTCTTGCCTATTATATTGAAAATCAGTTCCATGAATTTAAATTCAGCAAAGTCTGGCGAGATGA
ACACTATGTGAAGATTCAAGTGAAAAGCAGCATTGGTCAAAACATGGTGACCATAGTGCAGTCAAATGGT
AACTTAGACCCAGTGGAGTCTCCCGAGGGTTATGTGGCATTCAGTAAACCTACAGAAGTTTCTGGTAAAC
TGGTCCATGCTAATTTTGGCACTAAAAAGGACTTTGAAGAACTAAGTTATTCTGTGAATGGATCTTTAGT
GATTGTTAGAGCAGGGGAAATTACTTTTGCAGAAAAGGTTGCAAATGCCCAAAGCTTTAATGCAATTGGT
GTCCTCATATACATGGACAAGAATAAATTCCCCGTTGTTGAGGCAGACCTTGCACTCTTTGGACATGCTC
ATCTAGGAACTGGTGATCCATACACACCTGGCTTTCCTTCTTTCAATCATACTCAGTTTCCGCCATCTCA
GTCATCAGGGTTGCCTAATATACCTGTGCAAACAATCTCAAGAGCTGCTGCAGAAAAGCTATTTGGAAAA
ATGGAAGGAAGCTGTCCTGCTAGATGGAACATAGATTCTTCATGTAAGCTGGAACTTTCACAGAATCAAA
ATGTGAAGCTCATTGTGAAAAACGTACTGAAAGAAAGAAGAATACTTAACATCTTTGGAGTTATTAAAGG
TTATGAGGAACCAGACCGTTATGTTGTAGTAGGAGCCCAGAGAGACGCTTTGGGTGCTGGTGTTGCGGCG
AAGTCCAGTGTGGGAACAGGTCTTCTGTTGAAACTTGCCCAAGTATTCTCAGATATGATTTCAAAAGATG
GATTTAGACCCAGCAGAAGTATAATCTTTGCCAGCTGGACTGCAGGCGACTTTGGAGCTGTTGGTGCCAC
TGAGTGGTTGGAGGGATACCTTTCATCTTTGCATTTAAAAGCTTTCACTTATATTAATTTGGATAAAGTT
GTCCTTGGTACTAGTAACTTCAAAGTTTCTGCCAGCCCCTTATTATATACACTTATGGGAAAGATAATGC
AAGATGTAAAGCATCCAGTTGATGGAAAATCTCTATATAGAGACAGCAATTGGATTAGCAAAGTTGAGAA
ACTTTCCTTTGACAATGCTGCATATCCTTTCCTTGCATATTCTGGAATCCCAGCAGTTTCTTTTTGTTTT
TGTGAGGATGCAGACTATCCTTATTTGGGCACTAGATTGGATACCTATGAGGCATTGACTCAGAAAGTTC
CTCAGCTCAACCAAATGGTTCGTACAGCAGCGGAAGTGGCTGGTCAGCTCATTATTAAACTTACCCATGA
CGTTGAATTGAACCTGGACTATGAGATGTATAACAGCAAACTACTGTCATTTATGAAGGATCTGAACCAG
TTCAAAACAGATATCAGGGATATGGGTCTAAGTCTACAGTGGCTGTATTCCGCTCGTGGAGACTACTTCC
GTGCTACTTCTAGACTAACAACTGATTTTCATAATGCTGAGAAAACAAACAGATTTGTCATGAGGGAAAT
CAATGATCGTATTATGAAAGTGGAGTATCACTTCCTGTCGCCCTATGTATCTCCAAGAGAGTCTCCTTTC
CGACATATCTTCTGGGGCTCTGGCTCTCACACTCTCTCAGCTTTAGTGGAGAACTTGAAGCTTCGTCAAA
AAAATATTACTGCTTTTAATGAAACCCTCTTCAGAAACCAGTTGGCCCTGGCTACTTGGACTATTCAGGG
AGTCGCAAATGCCCTCTCTGGTGACATTTGGAATATTGACAATGAGTTTTAA

Translation (763 aa):
MMDQARSAFSNLFGGEPLSYTRFSLARQVDGDNSHVEMKLAADEEENADNNMKASVRKPKRFNGRLCFAA
IALVIFFLIGFMSGYLGYCKRVEQKEECVKLAETEETDKSETMETEDVPTSSRLYWADLKTLLSEKLNSI
EFADTIKQLSQNTYTPREAGSQKDESLAYYIENQFHEFKFSKVWRDEHYVKIQVKSSIGQNMVTIVQSNG
NLDPVESPEGYVAFSKPTEVSGKLVHANFGTKKDFEELSYSVNGSLVIVRAGEITFAEKVANAQSFNAIG
VLIYMDKNKFPVVEADLALFGHAHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPVQTISRAAAEKLFGK
MEGSCPARWNIDSSCKLELSQNQNVKLIVKNVLKERRILNIFGVIKGYEEPDRYVVVGAQRDALGAGVAA
KSSVGTGLLLKLAQVFSDMISKDGFRPSRSIIFASWTAGDFGAVGATEWLEGYLSSLHLKAFTYINLDKV
VLGTSNFKVSASPLLYTLMGKIMQDVKHPVDGKSLYRDSNWISKVEKLSFDNAAYPFLAYSGIPAVSFCF
CEDADYPYLGTRLDTYEALTQKVPQLNQMVRTAAEVAGQLIIKLTHDVELNLDYEMYNSKLLSFMKDLNQ
FKTDIRDMGLSLQWLYSARGDYFRATSRLTTDFHNAEKTNRFVMREINDRIMKVEYHFLSPYVSPRESPF
RHIFWGSGSHTLSALVENLKLRQKNITAFNETLFRNQLALATWTIQGVANALSGDIWNIDNEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH