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Report for CCDS28137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28137.1 Public Mus musculus 16 Ropn1 23 108 98 CCDS HistoryNCBI Gene:76378Re-query CCDS DB by CCDS ID:28137.1Re-query CCDS DB by GeneID:76378See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023530.4 ENSMUSP00000023530.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023530.4Link to Ensembl Protein Viewer:ENSMUSP00000023530.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023530Re-query CCDS DB by Protein ID:ENSMUSP00000023530
Original member NCBI NM_030744.2 NP_109669.1 Updated not alive Link to Nucleotide Sequence:NM_030744.2Link to Protein Sequence:NP_109669.1Re-query CCDS DB by Nucleotide ID:NM_030744Re-query CCDS DB by Protein ID:NP_109669
Current member NCBI NM_030744.3 NP_109669.1 Accepted alive Link to Nucleotide Sequence:NM_030744.3Link to Protein Sequence:NP_109669.1Re-query CCDS DB by Nucleotide ID:NM_030744Re-query CCDS DB by Protein ID:NP_109669Link to BLAST:NP_109669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109669.1 212 Q9ESG2 212 100% 0 0

Chromosomal Locations for CCDS 28137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 34666696 34666811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34669897 34670014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34671101 34671262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34677136 34677311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34678416 34678482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGCCTCAGACAGACAAGCAAGTATGCATCCCACCGGAGCTGCCGGAATTGCTGAAGCAGTTTACCAAAG
ATGCCATTCGGACCCAGCCTCCTGATCTCATACAGTGGGCAGCCGAATATTTCGGAGCCATGTCCCGTGG
AGAGATTCCTCCAGTGAGAGAGAGGTCTGAACAAATCCCTTTGTCCAACTGGGCTGAGCTGACACCTGAG
CTGCTGAAGGTCCTGCATTCTCGGGTTGCTGGCAGACTGATCATCCACGCAGATGAGCTGGCCCAGATGT
GGAAGGTGCTGAATCTCCCCACGGACCTGTTTAACAGTGTGATGAACGTGGGTCGCTTCACAGAGGAGAT
CGAGTGGCTGAAGTTTTTAGCCCTTGCTTGTAGCTCTCTTGGAGTTACCATTGCCAAAACTCTCAAGATA
GTGTGTGAAGTTTTATCCTCCGACCATGATGGAGGACCACCCCGGATTCCTTTCAGCACCTTCCAGTTTC
TGTACACGTATATCGCTGAAGTGGATGGGGAAATCTCTTCATCCCACGTTAGCAGGATGTTAAACTACAT
TGAACAGGAAGTAATTGGTCCTGATGGCTTAATCAAGGTGAATGACTTTACTCAAAACCCTAGGGTTCGG
CTGGAATAA

Translation (212 aa):
MPQTDKQVCIPPELPELLKQFTKDAIRTQPPDLIQWAAEYFGAMSRGEIPPVRERSEQIPLSNWAELTPE
LLKVLHSRVAGRLIIHADELAQMWKVLNLPTDLFNSVMNVGRFTEEIEWLKFLALACSSLGVTIAKTLKI
VCEVLSSDHDGGPPRIPFSTFQFLYTYIAEVDGEISSSHVSRMLNYIEQEVIGPDGLIKVNDFTQNPRVR
LE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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