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Report for CCDS28177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28177.1 Public Mus musculus 16 Gap43 23 108 98 CCDS HistoryNCBI Gene:14432Re-query CCDS DB by CCDS ID:28177.1Re-query CCDS DB by GeneID:14432See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102817.4 ENSMUSP00000099881.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102817.4Link to Ensembl Protein Viewer:ENSMUSP00000099881.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102817Re-query CCDS DB by Protein ID:ENSMUSP00000099881
Original member Current member NCBI NM_008083.2 NP_032109.1 Accepted alive Link to Nucleotide Sequence:NM_008083.2Link to Protein Sequence:NP_032109.1Re-query CCDS DB by Nucleotide ID:NM_008083Re-query CCDS DB by Protein ID:NP_032109Link to BLAST:NP_032109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032109.1 227 P06837 227 100% 0 0

Chromosomal Locations for CCDS 28177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 42249029 42249114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 42291799 42292366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 42340473 42340502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGCTGTGCTGTATGAGAAGAACCAAACAGGTTGAAAAGAATGATGAGGACCAAAAGATTGAACAAGATG
GTGTCAAGCCGGAAGATAAGGCTCATAAGGCTGCGACCAAAATTCAGGCTAGCTTCCGTGGACACATAAC
AAGGAAAAAGCTCAAAGGCGAGAAGAAGGGTGATGCACCAGCTGCTGAGGCCGAGGCCAAGGAGAAGGAT
GATGCTCCCGTTGCTGATGGTGTGGAGAAGAAGGAGGGAGATGGCTCTGCTACTACCGATGCAGCCCCAG
CCACCAGCCCCAAGGCTGAGGAGCCCAGCAAGGCAGGAGATGCACCTTCTGAGGAGAAGAAGGGTGAAGG
GGATGCGGCCCCCTCCGAGGAAAAGGCCGGCTCAGCGGAGACAGAAAGTGCTGCTAAAGCTACCACTGAT
AACTCCCCGTCCTCCAAGGCTGAAGATGGCCCAGCCAAGGAGGAGCCTAAACAAGCCGATGTGCCTGCTG
CTGTCACTGATGCTGCTGCCACCACCCCTGCTGCAGAGGATGCTGCCACCAAGGCAGCGCAGCCTCCAAC
GGAGACTGCAGAAAGCAGCCAAGCTGAGGAGGAGAAAGACGCTGTAGACGAAGCCAAACCTAAGGAAAGT
GCCCGACAGGATGAGGGTAAAGAAGACCCCGAGGCTGACCAAGAACATGCCTGA

Translation (227 aa):
MLCCMRRTKQVEKNDEDQKIEQDGVKPEDKAHKAATKIQASFRGHITRKKLKGEKKGDAPAAEAEAKEKD
DAPVADGVEKKEGDGSATTDAAPATSPKAEEPSKAGDAPSEEKKGEGDAAPSEEKAGSAETESAAKATTD
NSPSSKAEDGPAKEEPKQADVPAAVTDAAATTPAAEDAATKAAQPPTETAESSQAEEEKDAVDEAKPKES
ARQDEGKEDPEADQEHA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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