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Report for CCDS28180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28180.1 Public Mus musculus 16 Zdhhc23 23 108 98 CCDS HistoryNCBI Gene:332175Re-query CCDS DB by CCDS ID:28180.1Re-query CCDS DB by GeneID:332175See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165648.1 ENSMUSP00000128650.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165648.1Link to Ensembl Protein Viewer:ENSMUSP00000128650.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165648Re-query CCDS DB by Protein ID:ENSMUSP00000128650
Original member Current member EBI ENSMUST00000231700.1 ENSMUSP00000156253.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231700.1Link to Ensembl Protein Viewer:ENSMUSP00000156253.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231700Re-query CCDS DB by Protein ID:ENSMUSP00000156253
Original member Current member NCBI NM_001007460.2 NP_001007461.1 Accepted alive Link to Nucleotide Sequence:NM_001007460.2Link to Protein Sequence:NP_001007461.1Re-query CCDS DB by Nucleotide ID:NM_001007460Re-query CCDS DB by Protein ID:NP_001007461Link to BLAST:NP_001007461.1
Original member Current member NCBI NM_001368703.1 NP_001355632.1 Accepted alive Link to Nucleotide Sequence:NM_001368703.1Link to Protein Sequence:NP_001355632.1Re-query CCDS DB by Nucleotide ID:NM_001368703Re-query CCDS DB by Protein ID:NP_001355632Link to BLAST:NP_001355632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007461.1 425 Q5Y5T3 425 100% 0 0
NP_001355632.1 425 Q5Y5T3 425 100% 0 0

Chromosomal Locations for CCDS 28180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 43969146 43969413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43971399 43971566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43973468 43974166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43978908 43979050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGAAGCCAGTCAAAAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGTTGCGAATACATAG
ATCGAAATGGGGAAAAGAACCACGTGGCTGCCTGTTTGTGTGATTGTCAAGACCTCGATGAAGGCTGTGA
CAGATGGCTTACCTGTCAATCACTTCGGCCGGAGACTTGCGAAAGAATCACGGATACAATTTCTGACCGC
CTCCGAATTCCTTGGCTCAGAGGAGCCAAAAAGGTTAATATTAGCATCGTCCCTCCACTTGTGCTTTTGC
CGGTTTTCCTTCACGTGGCTTCCTGGCACTTCCTGCTGGGGGTGGTGGTTCTGACCTCCCTTCCCATGCT
GGCACTCTGGTATTACTACCTCACTCACAGAAGGAAAGAACAGACGCTGTTTTTCCTGAGCCTCGGGCTG
TTCTCACTGGGCTACATGTACTATGTGTTCCTGCGGGAAGTGGTCCCCCAAGGGCGCGTGGGGCCCACTC
AGCTGGCCCTCCTAACCTGCGGGTTACTTCTGATACTCTTAGCCTTGTACCGAGCCAAGAAGAATCCAGG
CTACCTCAGCAATGACAAATCCCCAAGCAACAGCCAAATTGAATGCCCGGTCAAAAAAGGGCAGGAGAAG
ACCAAAGGGTTCCCCGGCACAGACGCCTCGGGGAGCCTCAACAACCGCACACTGAAGGACGATGTTAGGG
GTTCCTCCAGGGTGGGGCTTGACAGCCCTGCCAAAGTGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGT
ACGACCCGCCCGGGCATGGCATTGCCGGATATGCGGTATCTGTGTACGGAGAATGGACCATCATTGTGTC
TGGATAAATAGCTGCGTCGGAGAATCAAACCATCAAGCATTTATACTTGCCCTTTCCATCTTCTTGCTCA
CTTCGGTTTACGGAATATCGCTGACCTTGAACACCATTTGTAGGGATAGAAGCCTCTTCACAGCCCTCTT
CTACTGTCCTGGAGTTTACGCTAATTACAGCTCAGCCCTGTCCTTCACCTGTGTGTGGTACTCTGTGATC
ATCACAGCCGGCATGGCCTACATCTTCCTCATCCAGCTGATAAACATCAGCTACAATGTAACGGAGAGGG
AAGTGCAGCAGGCCCTTCGCCAGAAGACAGGGCGCCGGCTCCTCTGCGGGCTCATCGTGGACACAGGCCA
GTACAACAGGGGCTTCCTGCGCAACTGGCTCCAGTTCTCCACCCTGGGCACACACACAGTCCACACCCCC
GCCGAAGACATCGTCTGA

Translation (425 aa):
MKPVKKKKTEEPELEPLCCCEYIDRNGEKNHVAACLCDCQDLDEGCDRWLTCQSLRPETCERITDTISDR
LRIPWLRGAKKVNISIVPPLVLLPVFLHVASWHFLLGVVVLTSLPMLALWYYYLTHRRKEQTLFFLSLGL
FSLGYMYYVFLREVVPQGRVGPTQLALLTCGLLLILLALYRAKKNPGYLSNDKSPSNSQIECPVKKGQEK
TKGFPGTDASGSLNNRTLKDDVRGSSRVGLDSPAKVKEDWCAKCQLVRPARAWHCRICGICVRRMDHHCV
WINSCVGESNHQAFILALSIFLLTSVYGISLTLNTICRDRSLFTALFYCPGVYANYSSALSFTCVWYSVI
ITAGMAYIFLIQLINISYNVTEREVQQALRQKTGRRLLCGLIVDTGQYNRGFLRNWLQFSTLGTHTVHTP
AEDIV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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