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Report for CCDS28257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28257.1 Public Mus musculus 16 Riox2 23 108 98 CCDS HistoryNCBI Gene:67014Re-query CCDS DB by CCDS ID:28257.1Re-query CCDS DB by GeneID:67014See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023407.11 ENSMUSP00000023407.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023407.11Link to Ensembl Protein Viewer:ENSMUSP00000023407.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023407Re-query CCDS DB by Protein ID:ENSMUSP00000023407
Original member Current member EBI ENSMUST00000160571.1 ENSMUSP00000125297.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160571.1Link to Ensembl Protein Viewer:ENSMUSP00000125297.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160571Re-query CCDS DB by Protein ID:ENSMUSP00000125297
Original member Current member NCBI NM_025910.3 NP_080186.3 Accepted alive Link to Nucleotide Sequence:NM_025910.3Link to Protein Sequence:NP_080186.3Re-query CCDS DB by Nucleotide ID:NM_025910Re-query CCDS DB by Protein ID:NP_080186Link to BLAST:NP_080186.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080186.3 465 Q8CD15 465 100% 0 0

Chromosomal Locations for CCDS 28257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 59475538 59475969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59479170 59479289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59480291 59480419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59483005 59483108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59486533 59486635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59487428 59487599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59489345 59489433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59491205 59491294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59491741 59491899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCCAAAGAAAGTGCAGCCCACAGGGGATGAGAACGAAGAAGCGTCTGTTCCTTGCAAGCGGGTGAAGG
AGGAGCTGCCTGAAACGCTTTCTGTATTAAACTTTGACAGCCCCAGTAGTTTCTTCGAAAGTTTAATCTC
ACCCATCAAAGTAGAGACTTTTTTCAAGGAATTCTGGGAACAAAAGCCCCTTCTCATCCAGAGGGATGAC
CCTGTACTGGCCAAATATTACCAGTCTCTGTTCAGCCTCTCAGATCTGAAGAGACTCTGCAAGAAAGGAG
TGTACTATGGAAGAGACGTGAATGTCTGCCGGAGCATCAGTGGGAAGAAGAAGGTTTTAAATAAGGACGG
CAGAGCACATTTTCTTCAGCTGAGAAAAGATTTTGATCAGAAGAGGGCAACAATTCAGTTTCACCAACCT
CAGAGATATAAGGATGAGCTGTGGCGGATCCAGGAAAAGCTGGAATGTTACTTTGGGTCCTTAGTAGGCT
CGAATGTGTACATGACTCCTGCAGGATCTCAGGGCCTCCCTCCACATTATGATGATGTTGAGGTTTTTAT
CCTGCAGCTGGAGGGAACGAAACACTGGCGCCTGTACTCCCCAACTGTGCCCCTGGCACACGAGTACAGT
GTGGAATCTGAGGACCGGATCGGCACACCGACACACGACTTCCTGCTGAAGCCTGGAGATTTGTTGTACT
TTCCCAGAGGGACCATTCATCAGGCAGAAACTCCTTCAGGCCTGGCCTACTCTATTCACCTGACTATTAG
CACCTACCAGAACAATTCATGGGGAGACTGCCTTTTGGATTCCATTTCGGGGTTCGTATTTGACATTGCA
AAGGAAGATGTGGCATTAAGGAGTGGAATGCCCCGGCGGATGCTCCTGAATGTGGAAACCCCAGCTGATG
TAACAAGGAAGTTGAGTGGCTTTCTGAGGACTCTTGCAGACCAGCTCGAGGGCAGAGAAGAGCTGCTGTC
ATCAGATATGAAGAAGGACTTCGTCAAGCACAGACTCCCTCCTTTCTTCGAGGGAAATGGAACGGAGACG
ATGGACCCAGGTAAACAGTTGCCAAGGTTGGACAACATAATAAGACTGCAGTTCAAAGATCACATTGTCC
TCACAGTAGGGCCAGATAAGAATCCATTTGATGAAGCTCAACAAAAGGTGGTTTACATCTATCATTCTCT
GAAGAATGTGAGGCAGATGCACATGATAGGAGAAGAGGAGGAATCCGAGATTTTCGGTCTTCGCTTTCCT
TTATCACATGTGGATGCTCTGAAGCAAATCTGGTGCGGGTCACCAATTCGTGTTAAGGACCTGAAACTTG
ACACAGATGAAGAAAAGGAGAACCTGGCACTGTCTCTCTGGTCGGAGTCTTTAATCCAAGTACTCTAG

Translation (465 aa):
MPKKVQPTGDENEEASVPCKRVKEELPETLSVLNFDSPSSFFESLISPIKVETFFKEFWEQKPLLIQRDD
PVLAKYYQSLFSLSDLKRLCKKGVYYGRDVNVCRSISGKKKVLNKDGRAHFLQLRKDFDQKRATIQFHQP
QRYKDELWRIQEKLECYFGSLVGSNVYMTPAGSQGLPPHYDDVEVFILQLEGTKHWRLYSPTVPLAHEYS
VESEDRIGTPTHDFLLKPGDLLYFPRGTIHQAETPSGLAYSIHLTISTYQNNSWGDCLLDSISGFVFDIA
KEDVALRSGMPRRMLLNVETPADVTRKLSGFLRTLADQLEGREELLSSDMKKDFVKHRLPPFFEGNGTET
MDPGKQLPRLDNIIRLQFKDHIVLTVGPDKNPFDEAQQKVVYIYHSLKNVRQMHMIGEEEESEIFGLRFP
LSHVDALKQIWCGSPIRVKDLKLDTDEEKENLALSLWSESLIQVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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