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Report for CCDS28277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28277.1 Public Mus musculus 16 Btg3 23 108 98 CCDS HistoryNCBI Gene:12228Re-query CCDS DB by CCDS ID:28277.1Re-query CCDS DB by GeneID:12228See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023570.13 ENSMUSP00000023570.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023570.13Link to Ensembl Protein Viewer:ENSMUSP00000023570.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023570Re-query CCDS DB by Protein ID:ENSMUSP00000023570
Original member Current member NCBI NM_001297747.1 NP_001284676.1 Accepted alive Link to Nucleotide Sequence:NM_001297747.1Link to Protein Sequence:NP_001284676.1Re-query CCDS DB by Nucleotide ID:NM_001297747Re-query CCDS DB by Protein ID:NP_001284676Link to BLAST:NP_001284676.1
Original member Current member NCBI NM_009770.3 NP_033900.1 Accepted alive Link to Nucleotide Sequence:NM_009770.3Link to Protein Sequence:NP_033900.1Re-query CCDS DB by Nucleotide ID:NM_009770Re-query CCDS DB by Protein ID:NP_033900Link to BLAST:NP_033900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284676.1 252 P50615 252 100% 0 0
NP_033900.1 252 P50615 252 100% 0 0

Chromosomal Locations for CCDS 28277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 78360299 78360538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78364802 78365009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78369113 78369250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78373245 78373417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGAAGAACGAAATTGCGGCTGTTGTCTTCTTTTTCACAAGGCTAGTTCGAAAGCATGACAAGTTGAAAA
AAGAAGCAGTTGAGAGGTTTGCTGAGAAATTAACTCAAATACTTCAAGAGAAATATAAAAATCACTGGTA
TCCAGAAAAACCATCCAAAGGTCAGGCCTACAGATGCATTCGTGTCAATAAGTTTCAGAGAGTTGATCCC
GATGTCCTGAAAGCCTGTGAGAACAGCTGCATCTTGTACAGCGACCTGGGCTTGCCTAAGGAGCTTACAC
TCTGGGTGGATCCGTGTGAGGTGTGCTGCCGGTATGGAGAGAAAAACAATGCGTTCATTGTTGCCAGCTT
TGAAAATGAGGACGAGAACAAGGATGAAATCTCCAAGAAAGTTAGCAGGGCTCTGGATAAGGTGACCTCT
GATTATCACTCAGGGTCCTCTTCCTCAGATGAAGACACAAGCAAGGAAGTGGACGTGAAACCCAGCTCAG
TGGCGGCAACACCAAGCCCCGTGTACCAGATTTCAGAACTGATATTCCCACCTCTTCCAATGTGGCACCC
TTTGCCCAGAAAAAAGCCAGGAATGTATCGAGGGAGCGGCCATCAGACTCACTACCCTCCTCCTGTTCCA
TTTGCTTATCCAAATCCAGGAAGGAAGAATAAACCATTCCGCCCAATTCCAGTGACATGGGTACCTCCTC
CTGGAATGCATTGTGACCGAAATCACTGGATTAATCCTCACATGTTAGCACCTCACTAG

Translation (252 aa):
MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTQILQEKYKNHWYPEKPSKGQAYRCIRVNKFQRVDP
DVLKACENSCILYSDLGLPKELTLWVDPCEVCCRYGEKNNAFIVASFENEDENKDEISKKVSRALDKVTS
DYHSGSSSSDEDTSKEVDVKPSSVAATPSPVYQISELIFPPLPMWHPLPRKKPGMYRGSGHQTHYPPPVP
FAYPNPGRKNKPFRPIPVTWVPPPGMHCDRNHWINPHMLAPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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