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Report for CCDS2828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2828.1 Public Homo sapiens 3 TMEM115 24 110 108 CCDS HistoryNCBI Gene:11070Re-query CCDS DB by CCDS ID:2828.1Re-query CCDS DB by GeneID:11070See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266025.4 ENSP00000266025.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266025.4Link to Ensembl Protein Viewer:ENSP00000266025.3Re-query CCDS DB by Nucleotide ID:ENST00000266025Re-query CCDS DB by Protein ID:ENSP00000266025
Original member Current member NCBI NM_007024.5 NP_008955.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007024.5Link to Protein Sequence:NP_008955.1Re-query CCDS DB by Nucleotide ID:NM_007024Re-query CCDS DB by Protein ID:NP_008955Link to BLAST:NP_008955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008955.1 351 Q12893 351 100% 0 0

Chromosomal Locations for CCDS 2828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50355343 50355547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50358213 50359063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGCAACGTGCCCTGCCAGGCGCCCGCCAGCACTTGGGGGCCATTCTGGCCAGCGCCAGCGTGGTGGTGA
AGGCTCTGTGTGCGGCGGTACTATTCCTCTACCTGCTCTCCTTCGCCGTGGACACAGGCTGCCTGGCGGT
CACCCCGGGCTACCTCTTTCCTCCCAACTTCTGGATCTGGACCCTGGCCACCCATGGGCTGATGGAGCAG
CATGTGTGGGACGTGGCCATCAGCCTGACAACGGTGGTGGTGGCCGGGCGTTTGCTGGAGCCCCTCTGGG
GGGCCTTGGAGCTGCTCATCTTCTTCTCAGTGGTGAATGTGTCTGTAGGGCTGCTGGGGGCCTTCGCCTA
CCTCCTCACCTACATGGCTTCCTTCAACCTGGTCTACCTGTTCACTGTCCGTATCCACGGCGCCTTGGGC
TTCCTAGGTGGCGTCCTGGTGGCACTCAAGCAAACCATGGGGGACTGTGTGGTCCTGCGAGTGCCCCAGG
TGCGCGTCAGTGTGATGCCCATGCTGCTGCTGGCGCTGCTGCTCCTGCTGCGGCTCGCCACGCTGCTCCA
GAGCCCGGCGCTGGCTTCCTATGGCTTCGGGCTGCTCTCCAGTTGGGTATATCTTCGCTTCTACCAGCGC
CATAGCCGGGGCCGAGGGGACATGGCTGACCACTTTGCTTTCGCCACTTTCTTCCCTGAGATCCTGCAGC
CTGTGGTGGGTTTGCTGGCGAACTTGGTGCACAGCCTCCTGGTGAAGGTAAAGATATGCCAGAAGACGGT
GAAGCGCTACGATGTGGGTGCCCCATCCTCCATCACCATCAGCCTGCCAGGCACAGACCCTCAAGACGCC
GAGCGGAGAAGGCAACTGGCCCTGAAGGCACTCAATGAGCGGCTGAAGAGAGTGGAAGACCAGTCCATCT
GGCCCAGCATGGATGATGATGAAGAGGAGTCTGGGGCCAAGGTGGACAGCCCCCTGCCCTCAGACAAAGC
TCCCACACCCCCAGGGAAGGGGGCTGCCCCAGAATCCAGTCTAATCACCTTCGAGGCAGCTCCCCCGACG
CTGTAA

Translation (351 aa):
MQRALPGARQHLGAILASASVVVKALCAAVLFLYLLSFAVDTGCLAVTPGYLFPPNFWIWTLATHGLMEQ
HVWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALG
FLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQR
HSRGRGDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDA
ERRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGKGAAPESSLITFEAAPPT
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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