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Report for CCDS28286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28286.1 Public Mus musculus 16 Cyyr1 23 108 98 CCDS HistoryNCBI Gene:224405Re-query CCDS DB by CCDS ID:28286.1Re-query CCDS DB by GeneID:224405See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114174.2 ENSMUSP00000109811.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114174.2Link to Ensembl Protein Viewer:ENSMUSP00000109811.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114174Re-query CCDS DB by Protein ID:ENSMUSP00000109811
Original member NCBI NM_144853.3 NP_659102.1 Updated not alive Link to Nucleotide Sequence:NM_144853.3Link to Protein Sequence:NP_659102.1Re-query CCDS DB by Nucleotide ID:NM_144853Re-query CCDS DB by Protein ID:NP_659102
Current member NCBI NM_144853.4 NP_659102.1 Accepted alive Link to Nucleotide Sequence:NM_144853.4Link to Protein Sequence:NP_659102.1Re-query CCDS DB by Nucleotide ID:NM_144853Re-query CCDS DB by Protein ID:NP_659102Link to BLAST:NP_659102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659102.1 165 Q8VIH7 165 100% 0 0

Chromosomal Locations for CCDS 28286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 85457515 85457681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85465537 85465691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85544821 85544923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85550036 85550108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGACGCGCTGAGGCTGCCCCGGCGTCCAGGGGTCCTGCTTCCGAAGTTGATCCTGCTCTTTGTTTATG
CAGGGGATTGCCTGGCGCAGTGTGGCAAAGAGTGCCACTCTTACTGCTGCGACGGTAGCACGCCCTACTG
CTGCTCCTACTACGCCTATATTGGGAACATTCTCTCGGGCACGGCGATTGCTGGCATCGTGTTTGGAATC
GTGTTCATCATGGGGGTCATTGCAGGAATCGCCATCTGCATCTGCATGTGCATGAAGAACAACCGGGGGA
CCCGCGTGGGGGTCATCAGAGCAGCACACATCAACGCCATCTCCTATCCCATGGCACCACCCCCCTATAC
TTATGACCACGAGATGGAATATCGCACAGACCTGCCACCTCCATACTCTGCAGCCCCACAGGCTTCGGCC
CAGCGCTCTCCACCCCCTCCGTATCCTGGAAATCCAAGGAAATATTCCTCCTCCCAGAACAGAATACGTG
ACAATTAG

Translation (165 aa):
MDALRLPRRPGVLLPKLILLFVYAGDCLAQCGKECHSYCCDGSTPYCCSYYAYIGNILSGTAIAGIVFGI
VFIMGVIAGIAICICMCMKNNRGTRVGVIRAAHINAISYPMAPPPYTYDHEMEYRTDLPPPYSAAPQASA
QRSPPPPYPGNPRKYSSSQNRIRDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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