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Report for CCDS28340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28340.1 Public Mus musculus 16 Setd4 23 108 98 CCDS HistoryNCBI Gene:224440Re-query CCDS DB by CCDS ID:28340.1Re-query CCDS DB by GeneID:224440See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023669.13 ENSMUSP00000023669.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023669.13Link to Ensembl Protein Viewer:ENSMUSP00000023669.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023669Re-query CCDS DB by Protein ID:ENSMUSP00000023669
Original member Current member EBI ENSMUST00000233931.1 ENSMUSP00000156723.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233931.1Link to Ensembl Protein Viewer:ENSMUSP00000156723.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233931Re-query CCDS DB by Protein ID:ENSMUSP00000156723
Original member NCBI NM_145482.3 NP_663457.2 Updated not alive Link to Nucleotide Sequence:NM_145482.3Link to Protein Sequence:NP_663457.2Re-query CCDS DB by Nucleotide ID:NM_145482Re-query CCDS DB by Protein ID:NP_663457
Current member NCBI NM_145482.4 NP_663457.2 Accepted alive Link to Nucleotide Sequence:NM_145482.4Link to Protein Sequence:NP_663457.2Re-query CCDS DB by Nucleotide ID:NM_145482Re-query CCDS DB by Protein ID:NP_663457Link to BLAST:NP_663457.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663457.2 439 P58467 439 100% 0 0

Chromosomal Locations for CCDS 28340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 93583550 93583684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93585179 93585302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93586237 93586317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93587819 93587900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93589911 93590085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93590874 93591303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93593247 93593335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93596298 93596335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93599212 93599307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 93601638 93601707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGCAGAGACGAAGAGGAAGAACAGAGAGGGCCAGGAAGAGACGGCGGCGAAGCTCTGGTTCAAGAGCAG
TAAATGAGAGCTACAGATCAGAATTTATAGAGCTAAGAAAATGGCTGAAAGAAAGGAAGTTTGAAGACAC
AGACTTAGTACCCGCCAGCTTTCCAGGAACAGGAAGAGGGCTGATGAGCAAAGCGTCGTTGCAGGAGGGC
CAGGTGATGATCTCACTGCCTGAGAGCTGTCTGCTCACCACGGACACTGTGATTCGAAGCTCCCTAGGGC
CCTACATTAAGAAGTGGAAGCCTCCTGTGTCTCCTCTGCTGGCCTTGTGTACTTTCTTAGTCTCAGAAAA
GCATGCCGGCTGTCGGTCCCTCTGGAAGTCTTACCTGGACATCTTACCCAAGTCATACACCTGCCCGGTG
TGTTTGGAGCCGGAAGTGGTAGATCTTCTTCCCAGCCCTTTAAAGGCGAAGGCGGAAGAGCAGAGAGCCC
GAGTGCAGGACCTGTTTACCTCCGCTAGAGGCTTCTTCTCTACCCTGCAGCCTCTGTTTGCAGAGCCTGT
GGACAGCGTTTTCAGCTACCGAGCCTTCCTGTGGGCCTGGTGCACGGTGAACACCAGGGCTGTGTACCTG
AGGTCCAGGAGGCAGGAGTGCCTTTCCGCAGAGCCGGACACGTGTGCGCTTGCTCCGTTCCTGGACCTGC
TGAATCACAGCCCACATGTGCAGGTAAAAGCGGCGTTTAACGAGAAAACCAGGTGCTATGAGATTAGAAC
AGCCTCGCGCTGTAGGAAGCACCAGGAGGTGTTCATCTGCTACGGCCCCCATGATAACCAGAGGCTGCTC
CTGGAGTATGGCTTTGTCTCCGTCCGCAATCCTCACGCCTGCGTTCCTGTCTCGGCAGACATGCTGGTTA
AGTTCCTCCCTGCAGCAGATAAGCAGCTCCACAGGAAGATAACCATTTTGAAGGATCATGGCTTTACAGG
AAATCTGACGTTTGGATGGGATGGGCCGTCCTGGAGGCTACTCACGGCTCTCAAGTTGCTGTGTCTGGAA
GCCGAGCGCTTCACATCCTGGAAAAAGGTGCTCCTTGGCGAAGTCATCTCCGATACAAACGAGAAGACAA
GCTTGGGCGTGGCCCAGAAAATATGCTCTGACGTCATCGAGGAGACGCACGCTGTGCTGCGCAAGGTTTC
TGACATGAAGGAAGGGACAGTGTCACTGAGAAGCCAGCTCTCCTTGGTGGAAGCCTTGAGGATGGAAGAG
CTTAGGATTCTCCAGGCTTCTGCTGAGATCCTGAGTGGCTTGCTAGCCCCCTTTTCCTGA

Translation (439 aa):
MQRRRGRTERARKRRRRSSGSRAVNESYRSEFIELRKWLKERKFEDTDLVPASFPGTGRGLMSKASLQEG
QVMISLPESCLLTTDTVIRSSLGPYIKKWKPPVSPLLALCTFLVSEKHAGCRSLWKSYLDILPKSYTCPV
CLEPEVVDLLPSPLKAKAEEQRARVQDLFTSARGFFSTLQPLFAEPVDSVFSYRAFLWAWCTVNTRAVYL
RSRRQECLSAEPDTCALAPFLDLLNHSPHVQVKAAFNEKTRCYEIRTASRCRKHQEVFICYGPHDNQRLL
LEYGFVSVRNPHACVPVSADMLVKFLPAADKQLHRKITILKDHGFTGNLTFGWDGPSWRLLTALKLLCLE
AERFTSWKKVLLGEVISDTNEKTSLGVAQKICSDVIEETHAVLRKVSDMKEGTVSLRSQLSLVEALRMEE
LRILQASAEILSGLLAPFS


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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