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Report for CCDS28454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28454.1 Public Mus musculus 17 Thoc6 23 108 98 CCDS HistoryNCBI Gene:386612Re-query CCDS DB by CCDS ID:28454.1Re-query CCDS DB by GeneID:386612See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047436.10 ENSMUSP00000038137.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047436.10Link to Ensembl Protein Viewer:ENSMUSP00000038137.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047436Re-query CCDS DB by Protein ID:ENSMUSP00000038137
Original member Current member EBI ENSMUST00000095579.10 ENSMUSP00000093239.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095579.10Link to Ensembl Protein Viewer:ENSMUSP00000093239.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095579Re-query CCDS DB by Protein ID:ENSMUSP00000093239
Original member Current member EBI ENSMUST00000115490.8 ENSMUSP00000111153.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115490.8Link to Ensembl Protein Viewer:ENSMUSP00000111153.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115490Re-query CCDS DB by Protein ID:ENSMUSP00000111153
Original member Current member NCBI NM_001008425.2 NP_001008425.1 Accepted alive Link to Nucleotide Sequence:NM_001008425.2Link to Protein Sequence:NP_001008425.1Re-query CCDS DB by Nucleotide ID:NM_001008425Re-query CCDS DB by Protein ID:NP_001008425Link to BLAST:NP_001008425.1
Original member Current member NCBI NM_001357380.1 NP_001344309.1 Accepted alive Link to Nucleotide Sequence:NM_001357380.1Link to Protein Sequence:NP_001344309.1Re-query CCDS DB by Nucleotide ID:NM_001357380Re-query CCDS DB by Protein ID:NP_001344309Link to BLAST:NP_001344309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008425.1 341 Q5U4D9 341 100% 0 0
NP_001344309.1 341 Q5U4D9 341 100% 0 0

Chromosomal Locations for CCDS 28454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23668806 23668886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23668976 23669110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23669196 23669306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23669391 23669453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23669527 23669576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23669847 23669949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23670036 23670107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23670193 23670241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23670323 23670360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23670449 23670552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23670641 23670705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23670792 23670907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23673514 23673552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGAGCATGCCGCACCGCTCGCGGTGCCTCTGGGTCAGGCTGAGGTATTTCAGGCCCTGCAGCGACTGC
ACATGACCATCTTTTCCCAGAGTGTCTCCCCCTGCGGGAAGTTTCTGGCAGCTGGCAACAATTACGGGCA
GATTGCCATCTTCAGTTTGTCTGCTGCCTTAAGTTCAGAGGCCAAAGAAGAAAGCAAAAAACCGGTGGTG
GTCTTCCACGCCCATGACGGGCCTGTCTACAGCATGGTCTCCACAGATCGACACCTACTCAGTGCTGGCG
ATGGAGAGGTCAAGGGTTGGCTTTGGGCAGAAATTCTCAAGAAGGGCTGTAAGGAACTGTGGCGTCGCCA
GCCTCCATACAGGACCAGTCTGGAAGTACCCGAAATCAATGCCTTGCTGCTTGTCCCCAAGGAGAATTCG
CTCATCCTGGCTGGGGGAGATTGTCAGCTGCACAGTATGGATCTGGAAACTGGGGCCTTCACACGGGCCC
TCCGGGGCCACACAGACTACATCCATTGCCTGGCACTGAGGGAGCGCAGCCCTGAGGTATTGTCTGGCGG
TGAGGATGGAGCTGTACGGCTTTGGGATCTCCGTATAGCCAAAGAGGTCCAGACCATCGAAGTCTACAAG
CATGAGGAGTGCTCGAGGCCCCATAATGGGCGCTGGATTGGCTGCTTGGCCACTGACTCAGACTGGATGG
TCTGTGGAGGGGGCCCAGCCCTCACCCTCTGGCACCTCAGGTCTTCCACACCCACTACCGTCTTTCCTAT
TCGAGCACCACAGAAGCACGTCACCTTCTACCAGGATCTGATCCTGTCTGCTGGCCAGGGCTGTTGTGTC
AATCACTGGCAACTGAGCGGGGAGCTTAAGGCCCAGGTGCCTGGCTCCTCCCCAGGGCTGCTCAGCCTGA
GCCTCAACCAGCAGCCAGCAGCCCCAGAGTGCAAGGTCCTGACTGCATCGGGCAACAGCTGTCGAGTAGA
TGTCTTTACCAACCTGGGCTACCGAGCCTTCTCTTTGTCCTTTTGA

Translation (341 aa):
MEHAAPLAVPLGQAEVFQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPVV
VFHAHDGPVYSMVSTDRHLLSAGDGEVKGWLWAEILKKGCKELWRRQPPYRTSLEVPEINALLLVPKENS
LILAGGDCQLHSMDLETGAFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYK
HEECSRPHNGRWIGCLATDSDWMVCGGGPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCV
NHWQLSGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLGYRAFSLSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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