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Report for CCDS28549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28549.1 Public Mus musculus 17 Luc7l 23 108 98 CCDS HistoryNCBI Gene:66978Re-query CCDS DB by CCDS ID:28549.1Re-query CCDS DB by GeneID:66978See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114976.8 ENSMUSP00000110627.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114976.8Link to Ensembl Protein Viewer:ENSMUSP00000110627.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114976Re-query CCDS DB by Protein ID:ENSMUSP00000110627
Original member Current member NCBI NM_028190.3 NP_082466.2 Accepted alive Link to Nucleotide Sequence:NM_028190.3Link to Protein Sequence:NP_082466.2Re-query CCDS DB by Nucleotide ID:NM_028190Re-query CCDS DB by Protein ID:NP_082466Link to BLAST:NP_082466.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082466.2 371 Q9CYI4-1 371 100% 0 0

Chromosomal Locations for CCDS 28549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26253031 26253091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26255031 26255125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26257926 26258024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26266283 26266393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26267215 26267358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26275674 26275850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26277546 26277634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26279333 26279362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26279961 26280128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26281625 26281766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGTCCGCCCAGGCGCAGATGCGGGCCCTGTTGGACCAGCTCATGGGCACGGCTCGGGACGGAGATGAAA
CCAGACAGAGGGTCAAGTTTACAGATGACCGTGTCTGCAAGAGTCACCTTCTGGACTGCTGCCCCCATGA
CATCCTTGCTGGGACGCGCATGGATTTAGGAGAATGTACCAAAATCCACGACTTGGCTCTTCGAGCAGAT
TATGAAATTGCAAGTAAAGAAAGAGACCTGTTTTTTGAATTAGATGCTATGGATCACTTAGAGTCCTTCA
TTGCAGAGTGTGATCGGAGAACCGAACTTGCCAAAAAGCGGCTGGCTGAAACACAGGAGGAAATCAGTGC
AGAAGTTTCGGCTAAGGCAGAAAAGGTACATGAATTAAATGAAGAAATAGGAAAACTTCTTGCTAAAGCT
GAGCAGCTAGGAGCTGAAGGAAATGTGGACGAATCCCAGAAGATTCTTATGGAAGTGGAGAAAGTTCGTG
CAAAGAAAAAAGAAGCAGAGGAAGAATATAGAAATTCCATGCCTGCATCCAGTTTTCAACAGCAAAAACT
CCGTGTTTGCGAGGTTTGTTCAGCTTACCTTGGTCTCCATGACAATGACCGTCGGCTTGCAGACCACTTC
GGGGGCAAGTTACACCTGGGGTTCATTCAGATCCGGGAGAAGCTTGATCAGTTGAGGAAAACTGTGGCTG
AAAAACAGGAAAAAAGAAATCAGGATCGATTGAGGAGAAGAGAGGAGAGAGAGCGAGAAGAGCGCCTGGG
CAGGAGGTCTGGATCAAGAACCCGAGATCGCAGAAGGTCACGCTCCCGGGATCGTCGACGGAGGCGGTCT
AGGTCTACCTCCAGAGAGCGGCGGAAGTTTTCCCGTTCCAGATCCCGAGATAGATACAGGCGCCATCGCA
GCCGTTCCCGGAGCCACAGCCGGGGTCACCGCCGGGCTTCCAGGGACCGGAGTACAAAATACAAGTTCTC
CAGGGAGCGCTCATTGAGAGAGGAATCCTGGGAGTACGGGCGGAATGAACGAGGGCCCACTGACTGGAGG
CTGGAGAATTCCAATGGCAAGACTGCATCGCGGAGGTCGGAGGAGAAGGAGGCTGGCGAGATCTGA

Translation (371 aa):
MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRAD
YEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKA
EQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHF
GGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLGRRSGSRTRDRRRSRSRDRRRRRS
RSTSRERRKFSRSRSRDRYRRHRSRSRSHSRGHRRASRDRSTKYKFSRERSLREESWEYGRNERGPTDWR
LENSNGKTASRRSEEKEAGEI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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