NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, January 28, 2025, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28597.1 Public Mus musculus 17 Tbc1d22b 23 108 98 CCDS HistoryNCBI Gene:381085Re-query CCDS DB by CCDS ID:28597.1Re-query CCDS DB by GeneID:381085See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28597.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048677.8 ENSMUSP00000046877.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048677.8Link to Ensembl Protein Viewer:ENSMUSP00000046877.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048677Re-query CCDS DB by Protein ID:ENSMUSP00000046877
Original member NCBI NM_198647.1 NP_941049.1 Updated not alive Link to Nucleotide Sequence:NM_198647.1Link to Protein Sequence:NP_941049.1Re-query CCDS DB by Nucleotide ID:NM_198647Re-query CCDS DB by Protein ID:NP_941049
Current member NCBI NM_198647.2 NP_941049.1 Accepted alive Link to Nucleotide Sequence:NM_198647.2Link to Protein Sequence:NP_941049.1Re-query CCDS DB by Nucleotide ID:NM_198647Re-query CCDS DB by Protein ID:NP_941049Link to BLAST:NP_941049.1

Chromosomal Locations for CCDS 28597.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29549939 29549994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29564432 29564488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29568392 29568699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29570587 29570766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29571665 29571735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29572970 29573098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29575156 29575221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29578829 29578943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29594677 29594783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29595848 29595923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29599839 29599966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29600146 29600241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29604844 29604972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGCCGCCGAGAACAGCAAGCAGTTCTGGAAGAGGAGCGCCAAGCTACCGGGGAGCATTCAGCCTGTGT
ATGGGGCTCAGCACCCTCCTCTGGATCCTCGGCTCACAAAAAACTTCATCAAAGAAAGGTCGAAAGTCAA
CTCAGTTCCTCTGAAGAACAAGAAGGCCTCCAGTTTCCACGAGTTTGCGCGGAATACCAGTGACGCCTGG
GACATTGGTGACGATGAGGAGGAGGACTTCTCCTCACCTCCTTTCCAGACTCTGAACTCGAAAGTGGCTT
TGGCGACTGCAGCCCAAGTCCTAGAAAACCACAGCAAGCTGAGGGTAAAACCGGAAAGGTCGCAGTCGAC
AACATCAGACGTCCCCGCCAACTACAAGGTCATAAAGTCCAGCAGTGACGCCCAGCTGTCCCGAAACTCC
AGTGACACGTGCCTGAGGAACCCGCTCCACAAACAGCAGTCTCTCCCTCTCCGACCCATCATCCCCCTTG
TCGCCCGGATCTCAGACCAGAATGCTTCTGGGGCTCCTCCAATGACAGTCCGGGAGAAAACGCGCCTGGA
AAAGTTTCGCCAGCTGCTTTCCAGCCACAACACTGACCTAGATGAATTGAGGAAGTGGAGCTGGCCAGGC
GTTCCCAGGGAAGTTCGACCAGTGACCTGGAGACTGCTGTCGGGCTATCTCCCGGCAAACACCGAGCGGC
GGAAGTTGACCCTGCAGCGGAAGCGGGAGGAGTACTTTGGCTTCATTGAGCAGTATTATGACTCTCGGAA
TGAAGAGCACCACCAGGATACCTACAGACAGATTCACATTGACATTCCGAGGACGAACCCTCTCATCCCC
TTGTTCCAGCAGCCGCTCGTCCAGGAGATCTTTGAACGAATTCTGTTTATCTGGGCCATCCGACACCCCG
CCAGTGGGTATGTCCAGGGAATTAATGACCTGGTCACTCCGTTCTTTGTCGTCTTCCTCTCGGAATATGT
AGAAGAGGACGTGGAGAACTTTGACGTGACCAACTTGTCTCAGGACATGCTGCGAAGCATTGAAGCCGAC
AGCTTCTGGTGCATGAGCAAGCTGCTGGACGGAATACAGGATAATTACACGTTTGCACAGCCAGGGATCC
AGAAGAAGGTCAAGGCGCTGGAAGAGCTCGTCAGCCGGATCGATGAGCAGGTACACAGTCACTTCAGGAG
GTACGAGGTGGAGTACCTGCAGTTTGCCTTTCGGTGGATGAACAACCTGCTGATGCGGGAACTTCCCCTA
CGCTGCACCATCCGCCTGTGGGACACGTACCAGTCTGAGCCAGAAGGCTTCTCGCACTTCCATCTCTATG
TCTGCGCCGCCTTCTTGATCAAGTGGAGGAAGGAGATTTTGGATGAGGAAGACTTTCAGGGCCTCCTCAT
GCTGCTGCAGAACCTGCCCACAATCCACTGGGGCAATGAGGAGATCGGGCTGCTGCTGGCTGAGGCCTAC
AGACTCAAGTACATGTTTGCAGATGCCCCCAACCACTACCGCCGATAG

Translation (505 aa):
MAAENSKQFWKRSAKLPGSIQPVYGAQHPPLDPRLTKNFIKERSKVNSVPLKNKKASSFHEFARNTSDAW
DIGDDEEEDFSSPPFQTLNSKVALATAAQVLENHSKLRVKPERSQSTTSDVPANYKVIKSSSDAQLSRNS
SDTCLRNPLHKQQSLPLRPIIPLVARISDQNASGAPPMTVREKTRLEKFRQLLSSHNTDLDELRKWSWPG
VPREVRPVTWRLLSGYLPANTERRKLTLQRKREEYFGFIEQYYDSRNEEHHQDTYRQIHIDIPRTNPLIP
LFQQPLVQEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEAD
SFWCMSKLLDGIQDNYTFAQPGIQKKVKALEELVSRIDEQVHSHFRRYEVEYLQFAFRWMNNLLMRELPL
RCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLPTIHWGNEEIGLLLAEAY
RLKYMFADAPNHYRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH