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Report for CCDS28606.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28606.2 Public Mus musculus 17 Wdr4 23 108 98 CCDS HistoryNCBI Gene:57773Re-query CCDS DB by CCDS ID:28606.2Re-query CCDS DB by GeneID:57773See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28606.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data. The updated start codon is restricted to mouse and rat and has a weak Kozak signal. It is possible that leaky scanning by ribosomes may allow a downstream start codon to be used at least some of the time. Alternative downstream start codons include the much more widely conserved start codons located 7 and 43 codons downstream of the updated start.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28606.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171171.8 ENSMUSP00000126061.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171171.8Link to Ensembl Protein Viewer:ENSMUSP00000126061.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171171Re-query CCDS DB by Protein ID:ENSMUSP00000126061
Original member NCBI NM_021322.2 NP_067297.2 Updated not alive Link to Nucleotide Sequence:NM_021322.2Link to Protein Sequence:NP_067297.2Re-query CCDS DB by Nucleotide ID:NM_021322Re-query CCDS DB by Protein ID:NP_067297
Current member NCBI NM_021322.3 NP_067297.2 Accepted alive Link to Nucleotide Sequence:NM_021322.3Link to Protein Sequence:NP_067297.2Re-query CCDS DB by Nucleotide ID:NM_021322Re-query CCDS DB by Protein ID:NP_067297Link to BLAST:NP_067297.2

Chromosomal Locations for CCDS 28606.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31496738 31496928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31498498 31498567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31498989 31499172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31499809 31499873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31500614 31500712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31501215 31501275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31502771 31502883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31503510 31503666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31509769 31509912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31510578 31510646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31512167 31512384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGAGACTACGCCCTGCGCGCATGCTCCTGGACGGCACGCCGTTCGCGCGGCGCCGAGTGACATCACTGA
CAAGCGCCAACAGGAAGGGCGCAGCGCGTCGCACGTGTCCGGAGGCGGCGGGCGGGCCCATGGCGAGCTC
TGCGGGGCTGGCACTGTGCGCCCAGACGCTGGTGGTGCGAGGAGGCAGCCGGTTCCTAGCCTTCTCCACT
ACGGGCAGTGATGATGACTGTGTCTTCACATACGACTGCAGTACTGCAGAGAAGAAGGCCACGCCAGAAG
ATAAAGGGGAGGACGGACAGCCCGCAGACACAGGGAGTGACTCGATTCTGGCGTCCACCTTCTCCAAGTC
TGGCCGCTATTTTGCTTTAACAGATGACAGTAAGCGTCTGATTCTTTTCCGTACAAAACCATGGCAATGT
CTGAGTGTCAGGATGGTGGTGCGGAGGTGCACCGCCCTGACCTTCACAGCCTCAGAGGACCGAGTCTTGG
TGGCTGACAAGTCTGGAGACGTCTACTCCTTTTCGGTGCTGGAGCCAGATGGATGTGGCAGGCTGGAGCT
TGGGCACCTCTCCATGCTGCTAGACGTGGCTGTGAGTCCTGATGACCAGTTTGTGCTTACTGCAGACCGG
GATGAGAAGATCCGGGTCAGCTGGGCTGCTGCCCCGCATAGCATCGAGTCTTTCTGCCTGGGACACACTG
AGTTTGTGAGCCGCATCCTTGTAGTGCCCAGTCATCCTGAACTGCTGCTTTCTTCCTCTGGGGATGGCAC
CCTGAGACTCTGGGAGTACAGAAGCGGTAGGCAGCTGCAGTGCTGTGACCTGGCCGGCCTACAGGAGCCT
GGAGAGCAGCCAGGCCACAAGGGGTTGGCCGCGTCCAGGATTGCATTCTGGGGACAGGAGAGCTATGTGG
TGCTTCTGTGTGAGTGCGTTCCCGTGGTCTTCGTCTTCCAGCTTGATGCCAGCAGACAGCAGCTGGTGTT
CAGACAGCGGCTGACTTTCCCTCACCGAGTGTGGGATGTTGTGTTTGAGGAGGCCCGGGGGCTGTGGGTT
CTACAGGACTGCCGTGATGCCCCCCTGGTGCTCTGGAGGCCTGTGGGTGGTGAGTGGCAGGCTGCTCCAG
ACGGTGCTGTGTCCCCGAGACTCTGCAGCCATCTCCGTGAGAGCTGGGCCATGCTGGAAGGTTCTGTTGG
TACAGATGACAGCTTCCGCAGCCTGTACAAGGCCACCTTTGACAACATGACCTCTTACCTGAAGAAAAAG
GAAGAGAGACTGCAGCAGCAGCTGAAGAAGAAGCGGCAAAGGAGCCCCTTCCCAGGGTCCCCGGAACAGA
CCAAAAAGGCGTGCCCGGGCCAGTCAGCCCTTAGTTGCTGA

Translation (456 aa):
MRLRPARMLLDGTPFARRRVTSLTSANRKGAARRTCPEAAGGPMASSAGLALCAQTLVVRGGSRFLAFST
TGSDDDCVFTYDCSTAEKKATPEDKGEDGQPADTGSDSILASTFSKSGRYFALTDDSKRLILFRTKPWQC
LSVRMVVRRCTALTFTASEDRVLVADKSGDVYSFSVLEPDGCGRLELGHLSMLLDVAVSPDDQFVLTADR
DEKIRVSWAAAPHSIESFCLGHTEFVSRILVVPSHPELLLSSSGDGTLRLWEYRSGRQLQCCDLAGLQEP
GEQPGHKGLAASRIAFWGQESYVVLLCECVPVVFVFQLDASRQQLVFRQRLTFPHRVWDVVFEEARGLWV
LQDCRDAPLVLWRPVGGEWQAAPDGAVSPRLCSHLRESWAMLEGSVGTDDSFRSLYKATFDNMTSYLKKK
EERLQQQLKKKRQRSPFPGSPEQTKKACPGQSALSC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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