NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28711.1 Public Mus musculus 17 Atat1 23 108 98 CCDS HistoryNCBI Gene:73242Re-query CCDS DB by CCDS ID:28711.1Re-query CCDS DB by GeneID:73242See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056034.12 ENSMUSP00000053853.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056034.12Link to Ensembl Protein Viewer:ENSMUSP00000053853.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056034Re-query CCDS DB by Protein ID:ENSMUSP00000053853
Original member Current member NCBI NM_028476.4 NP_082752.3 Accepted alive Link to Nucleotide Sequence:NM_028476.4Link to Protein Sequence:NP_082752.3Re-query CCDS DB by Nucleotide ID:NM_028476Re-query CCDS DB by Protein ID:NP_082752Link to BLAST:NP_082752.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082752.3 310 Q8K341-5 310 100% 0 0

Chromosomal Locations for CCDS 28711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35900839 35900872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35901368 35901611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35901983 35902054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35904290 35904335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35908563 35908664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35908853 35908966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35909088 35909148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35909259 35909350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35909431 35909491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35909929 35910035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAGTTCCCGTTCGATGTGGATGCGCTGTTCCCGGAGCGGATCACCGTGCTGGACCAGCACCTGCGGC
CTCCGGCCCGCCGACCCGGAACCACAACGCCGGCCCGTGTGGATCTGCAGCAGCAAATCATGACTATTGT
AGATGAGCTGGGCAAGGCTTCTGCCAAGGCGCAGCACCTCCCTGCACCCATCACCAGCGCTTTGAGGATG
CAAAGCAACCGGCACGTTATTTACATACTGAAGGACACCTCAGCCCGACCGGCAGGGAAAGGAGCCATTA
TTGGTTTCCTCAAAGTTGGATACAAGAAGCTCTTTGTACTGGATGACCGGGAGGCTCACAATGAGGTAGA
ACCCCTTTGCATTCTGGACTTTTACATCCACGAGTCGGTGCAACGGCATGGCCACGGGCGAGAACTTTTT
CAGCATATGTTACAGAAAGAGCGAGTGGAGCCCCACCAACTGGCCATTGACCGACCATCGCCGAAGCTGC
TCAAGTTCCTGAATAAGCACTACAACCTGGAGACCACAGTCCCACAGGTGAACAACTTTGTCATCTTTGA
AGGCTTCTTTGCCCATCAGCACCCTCCAGCACGGAAGCTGCCACCAAAAAGAGCAGAGGGAGACATTAAG
CCATACTCTTCCAGTGACAGAGAATTCCTGAAGGTAGCTGTGGAGCCTCCTTGGCCCCTGAACAGGGCCC
CTCGGCGTGCCACACCTCCAGCCCACCCACCTCCACGTTCTAGCAGCCTGGGCAACTCACCGGATCGGGG
TCCCCTTCGGCCCTTTGTTCCAGAGCAGGAGCTGCTTCGCTCCCTGCGTCTCTGTCCCCCACACCCTACT
GCACGCCTTCTGCTGGCCACTGACCCTGGAGGCAGCCCAGCCCAGCGCAGACGCACCAGCTCCCTTCCCC
GATCTGATGAGAGTCGATACTGA

Translation (310 aa):
MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIVDELGKASAKAQHLPAPITSALRM
QSNRHVIYILKDTSARPAGKGAIIGFLKVGYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELF
QHMLQKERVEPHQLAIDRPSPKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHPPARKLPPKRAEGDIK
PYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPDRGPLRPFVPEQELLRSLRLCPPHPT
ARLLLATDPGGSPAQRRRTSSLPRSDESRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH