NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28783.1 Public Mus musculus 17 Crisp3 23 108 98 CCDS HistoryNCBI Gene:11572Re-query CCDS DB by CCDS ID:28783.1Re-query CCDS DB by GeneID:11572See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026499.5 ENSMUSP00000026499.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026499.5Link to Ensembl Protein Viewer:ENSMUSP00000026499.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026499Re-query CCDS DB by Protein ID:ENSMUSP00000026499
Original member Current member NCBI NM_009639.3 NP_033769.1 Accepted alive Link to Nucleotide Sequence:NM_009639.3Link to Protein Sequence:NP_033769.1Re-query CCDS DB by Nucleotide ID:NM_009639Re-query CCDS DB by Protein ID:NP_033769Link to BLAST:NP_033769.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033769.1 241 Q03402 241 100% 0 0

Chromosomal Locations for CCDS 28783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40222413 40222519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40225804 40225904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40228787 40228881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40232539 40232684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40234705 40234792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40235837 40235953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40239181 40239252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGCATTAATGCTTGTGCTGTTCTTCCTGGCTGCTGTACTGCCCCCATCCCTTCTTCAAGATAACTCTC
AGGAGAACAGTCTTGAGAAACTTTCAACCAGTAAAAAATCAGTCCAAGAAGAGATTGTAAGCAAGCACAA
CCAATTGAGACGAAAGGTTTCTCCATCTGGCAGTGACTTACTAAATATGGAATGGAACTATGATGCTCAA
GTGAATGCTCAGCAACGGGCAGACAAGTGTACATTCAGTCACAGTCCTATAGAACTCAGGACAACTAATT
TAAAATGTGGTGAGAATTTGTTCATGTCATCTTACCTTGTACCATGGTCTTCTGTAATCCAAGGATGGTA
TAATGAATCCAAAGGTCTTATATTTGGTGTGGGCCCAAAGCAAAATGTTAGTGTGGTTGGACATCATACT
CAGGTTGTTTGGAAATCAAATTTACAAGTTGCATGTGGAGTTGCTGAATGCCCTGAAAATCCACTGAGAT
ACTTTTATGTTTGTCGCTATTGTCCTGTATTGAATTACAGTGGCCATTATCCAAGCAGGCCATACCTAGC
TTACACAGCAAGAGCACCATGTGCCAGTTGTCCTGATCGCTGTGAAGATGGACTGTGCACCAAGAGTTGT
CAATATAAGGATATGTCTTTTTGGTGTAAACGTCTGGAATACGTCTGTAAACATCCAGGTCTTAAAAAAC
GTTGCCTAGCTACATGCCAATGTTAA

Translation (241 aa):
MALMLVLFFLAAVLPPSLLQDNSQENSLEKLSTSKKSVQEEIVSKHNQLRRKVSPSGSDLLNMEWNYDAQ
VNAQQRADKCTFSHSPIELRTTNLKCGENLFMSSYLVPWSSVIQGWYNESKGLIFGVGPKQNVSVVGHHT
QVVWKSNLQVACGVAECPENPLRYFYVCRYCPVLNYSGHYPSRPYLAYTARAPCASCPDRCEDGLCTKSC
QYKDMSFWCKRLEYVCKHPGLKKRCLATCQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH