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Report for CCDS28827.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28827.2 Public Mus musculus 17 Zfp318 23 108 98 CCDS HistoryNCBI Gene:57908Re-query CCDS DB by CCDS ID:28827.2Re-query CCDS DB by GeneID:57908See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28827.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data and transcript data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28827.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113481.8 ENSMUSP00000109109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113481.8Link to Ensembl Protein Viewer:ENSMUSP00000109109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113481Re-query CCDS DB by Protein ID:ENSMUSP00000109109
Original member Current member NCBI NM_207671.4 NP_997554.2 Accepted alive Link to Nucleotide Sequence:NM_207671.4Link to Protein Sequence:NP_997554.2Re-query CCDS DB by Nucleotide ID:NM_207671Re-query CCDS DB by Protein ID:NP_997554Link to BLAST:NP_997554.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997554.2 2237 Q99PP2-1 2237 100% 0 0

Chromosomal Locations for CCDS 28827.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46383839 46384330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46386712 46386863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46396662 46397304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46398640 46400091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46402734 46402833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46405783 46406084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46409019 46409219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46409680 46409779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46410273 46410391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46410634 46413786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6714 nt):
ATGTACCGCAGTGGCTCCCGCTCCTCCGTCTCTTCGCACCGGTCGAAAGACGGCAGCGCGAGCGGCCCTC
CGCCGGGCCGTCCCGTGGGCGCCTCCTCAGGCCCCACACGCCGCCCCTCGTCGCCGCCGCCGCCCTCTTG
CTCCTCGCTGCGGCTCCCCGCCCGCCGCCACCGCTCGCCCTCAGGCCACCGCGGCCGCTGGGCCTCGCCG
TCCCCGCCTCGGGGTCGTCGCGGCTCCCCGTCCCCGCCCCGCGGCCGCCGGGCCTCACCGTCTCCGACCC
GCGGCCGCCGGGCCTCGCCATCCCCTCCGCGGGGTCGTCGTGGCTCCCCGTCCCCGCCGCGCGCCCGTCG
CGGCTCCCCGTCGCCACCGCGGAGCCGGCGACACTACCCACCTGGCCTGGGTGGCTTCCGAGGCAGCATT
CGAGGCGAGTCCCGCGCCGACTTCGCCCGGGACGGCCGCGGAGACCATCCAGGCGGCGGCGGCGGCAGTC
GGAGACGTTCTCCTGGTCTGTGTTCTGATTCTTCTTTGGAGGAGAGTTTAAGGATCACAGTTGGCAATGA
CCACTTCTGTGTTAGCACACCAGAGCGGCGGCGGCTCAGTGACCGGCTGGGATCTCCAGTGGATGGTCTG
CAGGACATGGACAGGGATGACCTGACTGATGATTCTGTCTTCACTCGAAGCTCCCAGTGTTCTCGGGGTC
TTGAACGATACATTTCTCGGGAGGAGGGACCACTTAGTCCCTTCTTGGGACAACTTGATGAGGACTACCG
AACAAGAGAAACTTTTCTGCATCGACCTGAGTTTAGTCCCCAGAGCAGTTGTCATGATGAATTGTTGAGG
GGAACAGAGCGGAATAGAGACAAACTTAAAAGCTCCTCCTATTCCATACGATCTGAGGAAAGAAGCCGGG
AGGCCAAAAGGCCCCGTTATGATGACACAGAGAAGGTACACAGCTCAGGAGGGGATCACTCAAGTTTTAC
ATCTGGGACTCGAAACTATCGGCAGCGAAGAAGCAGCCCAAGCCCTAGGTTTCTAGATCCCGAGTTTCGA
GAACTGGACCTTGCCAGGCGAAAGCGAGAGGAAGAAGAGGAACAAAGTAGGAGCTTGAGTCAAGAGCTGG
TGGGTGTTGGTGATGATCAGATTGGCTGTTCCATCCCTGGCTTGGCAGGAGTCCTAACCACATCAGAGCC
TGGATATTCTTTGCAGCGGCCTGAGGAAGTACCTATGATGCCCAAGAAGTCCATTCTGAAGAAACGAATT
GAAGCGGACATGAAGCCTTCCTTGCAGCTTGAGAGCTTTTCTAGCGGTGCCAGCTCTGGTGAAGATCACC
CTCTTTATTCTGAACATTCACCTCTTCCTCTAAGTGGTGCTATTGCTGCTTTTACTTCAGAGATTGAAAA
CAAGGGGACTACAGTGGAGGCTGACCTGAAAGAGCCTCAGAGTAACCTATACCAGTGGGGCCCCCTCCGT
GAGATACCTAAAGACAACAGTGAAAAATTTGACAGTTTTCTAGGCTTTAAGGAAAAATTGGATTTGAAGG
CTGAGGGACTTGAGCAACAGACAGATTTCTTACTGCCCCATGAGAGAGCTAGCCAGGACGGCAGTGGCTT
TTCTCGAATTCTGAGCATGTTGGCTGATCCTACCATTACACAGGAAAAAAGAAGACGTAGCTTCCCTGAT
ATTGAGGATGAGGAGAAATTTCTCTATGGGGATGAAGAAGAGGATATAAAATCAGAATCTCCACTTAAGT
CCCTGGAGGACCCCGAGAGTGCAGGTACGAGACAGAAGGCAAACTCTCTGCCCTCAACTCCAGCTGTAAA
GCTAGAATCACTAGAAGAAAGCAATCCAGAATATGCCAAGATTCACAACTTGCTTAAGACCATAGGGCTG
GATATTGGAGTAGCAGAAATTGGTAAATTGGCTGCACGAACCCAGGAGAGACTTCATGGCAAGAAGCCAT
CATCACGCCCCTCAGCTGACCGACGTTTGTCAGCTGACCGACACTTGTCTGGTGACCGACACTTTTCAGC
TGACCGCTGTTCCTCAGTTGAGCACAGTTTCACAGCTGATTGGCGCTCATCAGACCCTCACAGACCGGAG
AGTAGGGAGACACATCATAGCAATACTCAGTCCCCAGAAGTATCTCATCCACACCCAGCTTCCCCGGTGG
ATCCTTACTTGCGCACCAAAAATAGCCCTCCATTCCTAAAGTCTGACCATCCAGTGTGCCATGTTTCAGG
ACCAGAGGTAGTTGGCAGTGGGTTTCAATCATCTGTTGCTGTTCGGTGCATGTTGCCATCAGCCCCATCT
ACCCCAATTAGACTTCCTCACTCTGCTGCGTTGTCTCAGTTTCATATACCAGGGGCCTCTCAGTTTGCTG
CAGCTCGGATACCTCCAAATTATCAGGGATCTGTCATTCCCTCTGCCTCCTTTGATGCATATAGGCACTA
CATGGCATATGCAGCCTCAAGGTGGCCTATGTATCCTGCCTCTCAACCACCAAGCCACCCTTTATCTGAC
CCTCATAGGCTATTACCAGTAACCAAACAAGCTGCTCGTAGTCGTCCCAATCTCCGGGTGATCCCTACTG
TGACTCCTGCAAAGCCCAAACAAGAAATACCAGTACTAGGCTCAATTTCTGTAAAGCGAATTCCTGTTCG
GGTGTCCATTCCATCACTCATAAAATATAATCCAAAGAAGATCTCTGATGAGAAGAACCGTGCCTCCCAG
AAGCAGAAGGTTATTGAAGAGAGAGAAAAACTGAAAACTGAACAGGAAGCCCGGCAAAAGAAAATGTTTT
ATCTCACGACTGAGTTGGAGCGGCTCCATAAACAGCAAGGGGAGATGTTGCGTAAGAAGCGAAGGGAGAA
GGATGGTCACAAAGATCCACTTCTGATGGAGGTGAGTCGACTTCAGGATAGTATTATGAAGGACATTGCC
GAGCTACATAAAGAGACAGAAGAAGCAGAAAAGAAGCAGTCTGAACTGGACAAAGTGGCTCAGATCTTGG
GAATTGATATCTTTGATAAATCCCTGAAATCTTCAAATGACAGTAAAGAGTCTACAGAGAAGCCTGAAAA
AGAAAAATCTAAGAGCCCAGAAAAAGAGTTGTCACCCTCAAACTCTTCCTCTAGCAACAAGGAATCAAAA
ATGAATGAAAAGTCCTGTATTAAGAGCCCTAGTTCTACTGAAAGCCTCCAACCAACTGTTAAGCAGTCTG
ACCAGCCTGTTGCTGCTTATGAGTATTATGATGCTGGCAGTCACTGGTGCAAAGACTGCAATACCACCTG
TGGGACCATGTTTGACTTCTTCACCCATATGCACAATAAGAAGCACACACAGACACTGGATCCCTACAAC
AGACCTTGGGCTTCAAAGACCCAGAGTGAGGCTAAGCAAGACACTGTAAAGCGAACTGACAAGATAACTG
TTCCTGCAAAAGGCTCTGAGTTTCTGATTCCTGTCACTGGGTTTTACTGCCAACTCTGTGAGGAATTTTT
GGGGGATCCAATTTCTGGAGAGCAGCATGTCAAGGGTCACCAGCACAACGAAAACTACAAGAAATATGTG
GAAGAAAACCCATTGTATGAAGAACGAAGAAATCTGGACCGCCAAGCTGGCTTGGCTGTCGTTCTAGAGA
CAGAGCGGCGACGGCAAAATGAGCTAAAACGCAAACTTAATGAGAAACCAAAGGAGGAGAAGATAGAAAA
AAAGGCAAGAATTGTGAGAGAAGTAAAGGAAGATGACAAAGCCCCTGGAGAACTAGAGGAGCAGCTCTCG
GAGGATGGGAGTGCCCCTGAGAAAGGTGAGGTGAAGGGGAACGCTAGCCTCAGACCCCAGGTGAAAGAAG
AGGTAAAGAAGGAGCCATCAGTAGCATCAATAGCAGCTTCTTTTGGAAAGTTCAGTTGGAAGAAGCCAGA
AAAAGAAGAAGAAAAAGGTTCAGTGGTGACCCCAGGGGCCCCAAAGGAAGACACGGTGGAAACCAGTAAG
GACAGAGATGACGGCAAAGCTGAAGTTGGAAAGGCAAAGCCCATCAAAATCAAGCTTTCTGGAAAAACTG
TCATTGCACACACCAGTCCCTGGACACCTGTCGTTACGACTTCAACACAGACTAAGATCCGACCCAACTT
GCCTATCCCATCCACAGTACTCCGCAAGTCAGGTTCAGCCACAGTGAGCAAGCCTGCTCCTCTTAATACC
TTTCTGTCTATCAAGTCCTCTGGAACATCCACCAAGCCTCTGCCAGTGGTTAAAGAGTCATCATCAGATC
TTCTCTTGCCTCCAGATATCATCTCCAAAGCTTTTGGAGGAGAAGAGGTGGTTCTAAAAGGGTCTCCAGA
GGAAAAAGTGGAACTGGCTGAAAAGAATGAGCCATCCCAAGTACCTGAGCAAATGCTGGCTCTACTTCCA
CCGCCACCACCTCCACCTCCACCCCCACCTCCACCTCCACCCCCTCCACCACCCCAGGCTGTACCTCAGC
TATCTGCCCCATCCCCTGCTCAAGCAAATGTTGTCTTAACTCCAGTTAAATCTAATTCGGTGATATCTCA
GACTTTCAGTCTTGGGTTCCAAGGTCCTAACATTTTGAACCCAGGGTTGCCTGTGGCCTTCATGGCCTCA
GAACAACCAACTGTAATTCCTTCTGATGAGACAGCTCCTGGGGTGAGTGAGAGTGACTGGGACCAGACCC
TAATCTCTATGTTAGTACGGCCTCCACCACCCCTTTCCAGTGTATTCAGTGAACAGGCCAAAAAATTAGA
AAAGCGAAATTCGTGCTTAGCCACAGCCAATGCTAAGGACCTGTATGATATATTCTACAGTAGTGGTGGA
AAGGGGGCCCATGAGACTAAGCTGAGTAGTAGTACATTAGCCAATGGGGAAAGCAGTAGCCTTCCTAGAA
CAGAAAGTTCAGATTTCTCCTCCACTTGTACTTTGAACAGTAGTATGTCCTCAGAGGACCTGCCTCAATG
TAGTGCTTTGGTCACTGCTACTGAAATCAGTAATCTTGAAAATCCTATTTCAAAAGGTATGGAGTCCACA
GGGAAATGGTCTGTTGTAGATCAGATAGATCCCAAAAGCAGAGACAGCACCTATAGCTTCCTACAGCCTC
TGACAAGATTATACCAAAATAAGCCTTATGAAATAGTTTCCCCAAAGACAGACACTTTGGTCATGTGGAC
TTCTGGTTCTTCCCAGAATGACACTCATAAAGATAGACCTCCAGAGGGGAAAATCAGATTTGACCTGGGA
GAGCCAGGGCCACCTGGTACAGATTCAACTTCTCATCTATCAGATACACACTGTCAAACCAACGGACCTC
AGAAGTTGATAGAAATTAACCTCATAGATAACCAAAACAAGAACCAAGAGGTATACCAGTCAGAGGGTTG
CAGAGAAAGTGAAATGAAGAGAAAGACTGAATTAAAAGGAAAGGTAGCAACTGAAGAAGAAGAAGAAGAA
GAAGAAGAAGGTGCCAACAGCATAGAAGATTCTAATTCAAACCATGGCAACAGAAATACATGGGAAGGAG
AAATAGGACAACCCAAGTTGTCAACAGTTGACAAAAAGGGAGAACAGTCTAGCAAATTGATGACCGGACA
TGAGAATACAAGTAAAGTAGTAATTGAATTGAGTCCGTCTCTCCCTTCCAAAAGGACAAAAATAGATTTA
TTTCCGTCATTGCTCCAGAATCCAAAAAGCATGCCTGAACTACTTCTGCTGTCTCCAGCTGGATCAGGTT
TGTGTTTAAAGAGACAAGAGATTTGGGAGAGGCCAGAAAAACCAGGATTGGAAGATGTGGAGCTACAAGG
TACCCGTCCAGAACTAACTGTGACAATAGAAAGCAAAGTTTTGGAAAACTTTGACACTACACACTTAGAG
GTAGAGGGGTTTGCATCTCTGAGGAATCTGGGGGATATGCATGCCAATTTCCACAATAGTCAGACAGAAC
AGACACGGAGGTCACCAACTGCCCTGTCAGAGAAAATGTCTGAAGAAATTTCTGTGTCATCTGTCATGTG
TAATCCTTCCAGTTCCAGTGACATTGAACCAGTACCATCTTTTTCTGGATTTCCATTAGAATCTCCCAAA
ACTTTGGTGCTTAACTTTGAAACAGAGGGTGCACATAGCTCATCTAATTCCAGAAATGGGAGAATCACCT
CTAACTCTTTGGAAACTGGACACCCTGTGGAAAATGTTGGCCACGACTTAGGAGGTGAGAGAACACACCA
GGCCCTTGACCTCTTAGCTGGAGGAATGTTGTCTGAGGACGTAAAAGAAACTTCGCCACTACAGAAAGAT
TTACTCAGAATGGAATCCACCACAGTCAGTCCTTCAGGCCTTGGACCATCTCCTTGCCTTCCAGACCTTG
TTGATTTTGTCACACGGACACCTGGAGTTCCAAAACAAAAACCATGTTCTCCACTTTCTGAGCCAGATGC
CTTTCTCAAGTGTAGTTCACTGGAGATGGGATCACCACCTCCAGAAATTCTGAGTGTGTCTGTCTCAGAG
GTAGCAGTTCCTCAAGTAAGTGAAGACAATGACAGTGCTTTGAATTTGGTAAAAACTCCACCCTCAGGCT
CCCCCTCAAGGGATCAGGTAGTTGGAGGCAATGTGAGCCCTCGGGAAATGCCTGAACAAGAAGCTGCAGT
TGATGTCATCCCAGACCACACAAGGTCCAATGTTTATAACAGTCAGGACTACTTAAATGGATGA

Translation (2237 aa):
MYRSGSRSSVSSHRSKDGSASGPPPGRPVGASSGPTRRPSSPPPPSCSSLRLPARRHRSPSGHRGRWASP
SPPRGRRGSPSPPRGRRASPSPTRGRRASPSPPRGRRGSPSPPRARRGSPSPPRSRRHYPPGLGGFRGSI
RGESRADFARDGRGDHPGGGGGSRRRSPGLCSDSSLEESLRITVGNDHFCVSTPERRRLSDRLGSPVDGL
QDMDRDDLTDDSVFTRSSQCSRGLERYISREEGPLSPFLGQLDEDYRTRETFLHRPEFSPQSSCHDELLR
GTERNRDKLKSSSYSIRSEERSREAKRPRYDDTEKVHSSGGDHSSFTSGTRNYRQRRSSPSPRFLDPEFR
ELDLARRKREEEEEQSRSLSQELVGVGDDQIGCSIPGLAGVLTTSEPGYSLQRPEEVPMMPKKSILKKRI
EADMKPSLQLESFSSGASSGEDHPLYSEHSPLPLSGAIAAFTSEIENKGTTVEADLKEPQSNLYQWGPLR
EIPKDNSEKFDSFLGFKEKLDLKAEGLEQQTDFLLPHERASQDGSGFSRILSMLADPTITQEKRRRSFPD
IEDEEKFLYGDEEEDIKSESPLKSLEDPESAGTRQKANSLPSTPAVKLESLEESNPEYAKIHNLLKTIGL
DIGVAEIGKLAARTQERLHGKKPSSRPSADRRLSADRHLSGDRHFSADRCSSVEHSFTADWRSSDPHRPE
SRETHHSNTQSPEVSHPHPASPVDPYLRTKNSPPFLKSDHPVCHVSGPEVVGSGFQSSVAVRCMLPSAPS
TPIRLPHSAALSQFHIPGASQFAAARIPPNYQGSVIPSASFDAYRHYMAYAASRWPMYPASQPPSHPLSD
PHRLLPVTKQAARSRPNLRVIPTVTPAKPKQEIPVLGSISVKRIPVRVSIPSLIKYNPKKISDEKNRASQ
KQKVIEEREKLKTEQEARQKKMFYLTTELERLHKQQGEMLRKKRREKDGHKDPLLMEVSRLQDSIMKDIA
ELHKETEEAEKKQSELDKVAQILGIDIFDKSLKSSNDSKESTEKPEKEKSKSPEKELSPSNSSSSNKESK
MNEKSCIKSPSSTESLQPTVKQSDQPVAAYEYYDAGSHWCKDCNTTCGTMFDFFTHMHNKKHTQTLDPYN
RPWASKTQSEAKQDTVKRTDKITVPAKGSEFLIPVTGFYCQLCEEFLGDPISGEQHVKGHQHNENYKKYV
EENPLYEERRNLDRQAGLAVVLETERRRQNELKRKLNEKPKEEKIEKKARIVREVKEDDKAPGELEEQLS
EDGSAPEKGEVKGNASLRPQVKEEVKKEPSVASIAASFGKFSWKKPEKEEEKGSVVTPGAPKEDTVETSK
DRDDGKAEVGKAKPIKIKLSGKTVIAHTSPWTPVVTTSTQTKIRPNLPIPSTVLRKSGSATVSKPAPLNT
FLSIKSSGTSTKPLPVVKESSSDLLLPPDIISKAFGGEEVVLKGSPEEKVELAEKNEPSQVPEQMLALLP
PPPPPPPPPPPPPPPPPPQAVPQLSAPSPAQANVVLTPVKSNSVISQTFSLGFQGPNILNPGLPVAFMAS
EQPTVIPSDETAPGVSESDWDQTLISMLVRPPPPLSSVFSEQAKKLEKRNSCLATANAKDLYDIFYSSGG
KGAHETKLSSSTLANGESSSLPRTESSDFSSTCTLNSSMSSEDLPQCSALVTATEISNLENPISKGMEST
GKWSVVDQIDPKSRDSTYSFLQPLTRLYQNKPYEIVSPKTDTLVMWTSGSSQNDTHKDRPPEGKIRFDLG
EPGPPGTDSTSHLSDTHCQTNGPQKLIEINLIDNQNKNQEVYQSEGCRESEMKRKTELKGKVATEEEEEE
EEEGANSIEDSNSNHGNRNTWEGEIGQPKLSTVDKKGEQSSKLMTGHENTSKVVIELSPSLPSKRTKIDL
FPSLLQNPKSMPELLLLSPAGSGLCLKRQEIWERPEKPGLEDVELQGTRPELTVTIESKVLENFDTTHLE
VEGFASLRNLGDMHANFHNSQTEQTRRSPTALSEKMSEEISVSSVMCNPSSSSDIEPVPSFSGFPLESPK
TLVLNFETEGAHSSSNSRNGRITSNSLETGHPVENVGHDLGGERTHQALDLLAGGMLSEDVKETSPLQKD
LLRMESTTVSPSGLGPSPCLPDLVDFVTRTPGVPKQKPCSPLSEPDAFLKCSSLEMGSPPPEILSVSVSE
VAVPQVSEDNDSALNLVKTPPSGSPSRDQVVGGNVSPREMPEQEAAVDVIPDHTRSNVYNSQDYLNG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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