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Report for CCDS28842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28842.1 Public Mus musculus 17 Rpl7l1 23 108 98 CCDS HistoryNCBI Gene:66229Re-query CCDS DB by CCDS ID:28842.1Re-query CCDS DB by GeneID:66229See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078286.5 ENSMUSP00000092888.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078286.5Link to Ensembl Protein Viewer:ENSMUSP00000092888.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078286Re-query CCDS DB by Protein ID:ENSMUSP00000092888
Original member Current member EBI ENSMUST00000233192.1 ENSMUSP00000156664.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233192.1Link to Ensembl Protein Viewer:ENSMUSP00000156664.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233192Re-query CCDS DB by Protein ID:ENSMUSP00000156664
Original member Current member NCBI NM_025433.3 NP_079709.2 Accepted alive Link to Nucleotide Sequence:NM_025433.3Link to Protein Sequence:NP_079709.2Re-query CCDS DB by Nucleotide ID:NM_025433Re-query CCDS DB by Protein ID:NP_079709Link to BLAST:NP_079709.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079709.2 246 Q9D8M4 246 100% 0 0

Chromosomal Locations for CCDS 28842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46778063 46778271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46778410 46778519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46779285 46779422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46780391 46780551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46781783 46781891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46782619 46782632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGGCGGAGGAAGGGGAAAGAAAAAAAATTCCTTTGGTTCCAGAAAATCTTCTGAAAAAGAGGAAGGCTT
ATCAAGCCCTCAAAGCCACTCAGGCAAAGCAGGCACTTTTGGCAAAGAGAGAGAGAAAAGGAAAGCAATT
CAGGTTCAGACGACTAGAATCTTTCGTGCATGATTCCTGGCGACAGCAACGTGACAAGGTGCGTGTCCAG
CGGCTGGAGGTGAAGCCTCGTGCTTTGGAGGTGCCTGATAAACATCCCTTGGCCTTCGTTATACGCATGG
AAAGGATTGAAGGAGTGAGTTTATTGGTAAAGAGCACCATCATGAAACTTGGCCTGAAGAAATTGTTCAG
TGGTGTCTTTGTCAAGGTCACCCCTCAGAGTGTAAGAATGCTGCGCACGGTGGAGCCTTATGTGACCTGG
GGATTTCCAAATCTGAAGTCTGTCCGGGAGCTCATCTTGAAACGTGGCCAAGCAAAGATTAACAATAAGA
CAGTCCCTCTGACGGACAACACGGTGATCGAGGAGCACCTGGGGAGATTTGGTGTCATTTGCCTGGAAGA
CCTCATCCATGAAATTGCCTTCCCTGGGAAGCATTTCCAGGAGGTCTCTTCATTTCTGTGCCCTTTCCTC
CTCTCTGTGGCCCGCCATGCTACCAGGAACAGAGTGGGCTTCCGCAAAGAGATGGGCTCCCCGGGCTACC
GGGGAGATCGGATCAATCAGCTCATTCGGCAGCTCAACTAG

Translation (246 aa):
MAEEGERKKIPLVPENLLKKRKAYQALKATQAKQALLAKRERKGKQFRFRRLESFVHDSWRQQRDKVRVQ
RLEVKPRALEVPDKHPLAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTW
GFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFL
LSVARHATRNRVGFRKEMGSPGYRGDRINQLIRQLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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