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Report for CCDS28899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28899.1 Public Mus musculus 17 Fem1a 23 108 98 CCDS HistoryNCBI Gene:14154Re-query CCDS DB by CCDS ID:28899.1Re-query CCDS DB by GeneID:14154See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060253.4 ENSMUSP00000057996.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060253.4Link to Ensembl Protein Viewer:ENSMUSP00000057996.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060253Re-query CCDS DB by Protein ID:ENSMUSP00000057996
Original member Current member NCBI NM_010192.4 NP_034322.3 Accepted alive Link to Nucleotide Sequence:NM_010192.4Link to Protein Sequence:NP_034322.3Re-query CCDS DB by Nucleotide ID:NM_010192Re-query CCDS DB by Protein ID:NP_034322Link to BLAST:NP_034322.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034322.3 654 Q9Z2G1 654 100% 0 0

Chromosomal Locations for CCDS 28899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56256909 56258873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGGATCTGCACACAGCGGTGTACAATGCGGCGCACGACGGCAAGCTGCCGCTGCTGCAGAAGCTGCTGG
CCGGCCGTGGGCGTGAGGAGCTGGAGGAGCTGCTGGGTGAGGTGGCCGGCGGTGGCACGCCACTGCTAAT
CGCAGCGCGCCGTGGACACCTAGACGTGGTGGAGTATCTGGTGGACCACTGCGGCGCCAGCGTGGAGGCG
AGCGGCTCCGTGCACTTCGATGGCGAGACCATCGAGGGCGCGCCGCCGCTCTGGGCAGCGTCGGCCGCGG
GTCACCTGGCCGTGGTGCGTAGCCTTCTGCGCCGAGGCGCCTCGGTCAACCGCACCACGCGCACCAACTC
CACGCCGCTGCGCGCCGCCTGCTTCGACGGCCACCTGGACGTGGTACGCTACCTGGTGGGCGAGCACAAG
GCGGACCTGGAGGTGGCCAATCGCCACGGCCACACGTGCCTTATGATCTCCTGCTACAAGGGCCACCGCG
AGATCGCGCGCTACCTGCTGGAGCGCGGCGCACAGGTGAACCGGCGCAGCGCCAAGGGCAACACCGCCCT
GCACGACTGTGCAGAATCTGGCAGCCTGGAGATCCTACAGCTGCTGCTGGGCTGCCACGCGCGCATGGAG
CGCGACGGCTATGGCATGACCCCGCTGCTGGCCGCCAGCGTCACCGGGCACACCAACATCGTGGAGTACC
TCATCCAGGAACAGCCGGGCCACGAGCAGCTCTCAGGGACAGAGCTTCCCGGGGAAGGCTCCTCCCAGGT
GGCAGGAAACCACTGCTCCACCCCAGAAGAAGCAGAACCGTATGAGAGCTGCTGCCCTACCAGCCGGGAA
GCAGCTGTGGAAGCTTTGGAGCTGCTGGGTGCCACCTACGTGGATAAGAAAAGGGATCTGCTTGGAGCCC
TGAAGCACTGGAGAAGGGCGATGGAACTCCGTCACCAGGGTGGAGGCTACCTCCCTAAGCCGGAGCCCCA
GCAACTGGTTCTGGCCTATGACTATTCCAGGGAGGTGACTACACCCCAAGAGTTGGAAGCCCTCATTACA
GATCCTGATGAAATGCGGATGCAGGCGCTGCTGATACGGGAGAGAATCTTGGGCCCCTCACATCCTGACA
CTTCATACTACATACGGTACCGGGGTGCTGTCTATGCGGACTCCGGGAATTTCGAGCGCTGTATCCGTCT
GTGGAAGTATGCCTTGGACATGCAACAAAACAACTTGGAGCCCCTGAGCCCCATGACCGCCAGCAGCTTC
CTGTCGTTTGCAGAGCTCTTCTCCTACGTGCTGCAGGACCGCTCGGCCAAGGGCAACCTGGGCATGCAGC
TTGGCTTTGCCGACCTCATGGGTGTGCTCAGCAAAGGGGTTCGGGAAGTGGAGCGGGCTCTGCAGTTGCC
CAAGGAACCGGGTGACTCCGCACAGTTCACCAAAGCCATTGCCATCATCCTCCACCTTCTGTACCTATTG
GAGAAGGTGGAGTGCACCCCCAGCCAGGAACACCTCAAGCACCAGACAGTCTACCGCCTGCTCAAGTGTG
CCCCTCGCGGTAAAAACGGCTTCACCCCACTACACATGGCGGTGGACAAGGAGACCACCAACGTGGGCCG
GTATCGTGTGGGCGTCTTCCCATCGCTGCAGGTGGTCAAGGTGCTGTTGGACTGCGGAGCAGACCCTGAC
AGCAGGGATTTCGACAACAACACCCCACTGCACATCGCTGCCCAGAATAATTGCCCGGCCATCATGGATG
CTCTCATCGAAGCTGGGGCCCACATGGACGCCACCAATGCCTTCAAAAAGACTGCCTACGAGCTGCTGGA
CTCGAAGCTGTTGGCTAAGAGCACCGTGCAGCCTTTCAATTATGTGACACTGCAGTGCCTAGCTGCCCGT
GCCCTGGACAGGAACAAGGTCCCTTATAAGGGCTTCATCCCAGAGGAGCTGGAGGCCTTCATCCAGTTGC
ATTGA

Translation (654 aa):
MDLHTAVYNAAHDGKLPLLQKLLAGRGREELEELLGEVAGGGTPLLIAARRGHLDVVEYLVDHCGASVEA
SGSVHFDGETIEGAPPLWAASAAGHLAVVRSLLRRGASVNRTTRTNSTPLRAACFDGHLDVVRYLVGEHK
ADLEVANRHGHTCLMISCYKGHREIARYLLERGAQVNRRSAKGNTALHDCAESGSLEILQLLLGCHARME
RDGYGMTPLLAASVTGHTNIVEYLIQEQPGHEQLSGTELPGEGSSQVAGNHCSTPEEAEPYESCCPTSRE
AAVEALELLGATYVDKKRDLLGALKHWRRAMELRHQGGGYLPKPEPQQLVLAYDYSREVTTPQELEALIT
DPDEMRMQALLIRERILGPSHPDTSYYIRYRGAVYADSGNFERCIRLWKYALDMQQNNLEPLSPMTASSF
LSFAELFSYVLQDRSAKGNLGMQLGFADLMGVLSKGVREVERALQLPKEPGDSAQFTKAIAIILHLLYLL
EKVECTPSQEHLKHQTVYRLLKCAPRGKNGFTPLHMAVDKETTNVGRYRVGVFPSLQVVKVLLDCGADPD
SRDFDNNTPLHIAAQNNCPAIMDALIEAGAHMDATNAFKKTAYELLDSKLLAKSTVQPFNYVTLQCLAAR
ALDRNKVPYKGFIPEELEAFIQLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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